Anoplopoma fimbria (sablefish): 129098772
Help
Entry
129098772 CDS
T09102
Symbol
shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb00260
Glycine, serine and threonine metabolism
afb00630
Glyoxylate and dicarboxylate metabolism
afb00670
One carbon pool by folate
afb01100
Metabolic pathways
afb01200
Carbon metabolism
afb01230
Biosynthesis of amino acids
afb01240
Biosynthesis of cofactors
afb04981
Folate transport and metabolism
Module
afb_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
129098772 (shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
129098772 (shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
129098772 (shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
129098772 (shmt1)
Enzymes [BR:
afb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
129098772 (shmt1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Motif
Other DBs
NCBI-GeneID:
129098772
NCBI-ProteinID:
XP_054463850
LinkDB
All DBs
Position
11:23736047..23742606
Genome browser
AA seq
483 aa
AA seq
DB search
MSLINGHNVVSKETWDSHNKMMLEPLSINDSEVFSIIKKEKHRQTYGLELIASENFASRA
VLEALGSCMNNKYSEGYPGQRYYGGTEHVDELERLCQKRALETYGLDSEKWGVNVQPYSG
SPANFAVYTAIVEPHGRIMGLDLPDGGHLTHGFMTEKKKISATSIFFESMPYKVNPETGY
IDYDRLQENARLFHPRLIIAGTSCYSRNLDYARLKQITNENGAYLMGDMAHISGLVAAGV
VPSPFEYCDIVTTTTHKTLRGCRAGLIFYRKGLRSVDAKGKEILYNLESLINQAVFPGLQ
GGPHNHAIAGVAVALKQAMTSEFKAYQMQVLANCKSLSNGLIDHGYKIVTGGSDNHLILL
DLRNKGTDGGRAEKVLEACAIACNKNTCPGDKSALRPSGLRFGSPALTSRGMVEDDFKKV
AEFIHRGIELTLEVQRSLDPKATLKEFIQALAKGEKFQQRISEIRAEVEGFAGQFTMPGL
PEL
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgattaatgggcacaatgttgtgagcaaagaaacatgggattcacacaacaag
atgatgctggagcctctgtccatcaacgactctgaggtgttctccatcataaaaaaagag
aagcacaggcagacgtacggtctggagctgatagcgtcagaaaactttgctagcagagcc
gttctagaggctctgggttcctgcatgaacaacaaatactctgaaggatatcctggtcag
aggtactatggtggtacggagcatgttgatgagctggagaggctctgccagaagagggca
ctagagacctatggactggactcagagaaatggggtgtcaacgtgcagccatactcgggt
tcacctgctaactttgccgtctacacggccatcgtggagccacatggcaggatcatgggg
ctggaccttcctgatggaggtcacctgacacacggcttcatgaccgagaagaagaaaatc
tcagcaacgtccatcttctttgaatccatgccgtataaggtgaatccagaaactggctac
attgactatgacagactgcaagaaaacgctcggctgttccaccccagactcatcattgca
ggaacaagctgctattcccgcaaccttgactacgcccgcctgaagcagatcactaatgag
aacggtgcatacttgatgggagacatggctcacatcagtggattggtggctgctggagtg
gtgccctcaccctttgagtactgtgacattgttaccacgacaacacacaagacgctgcgt
ggctgccgcgctggactcatcttctacaggaaaggcttgcggagtgtagatgccaagggg
aaggagattctgtacaatctggagtctttgatcaatcaggctgtgtttccagggctgcag
ggaggaccacacaaccacgctattgcaggtgttgctgtcgctctcaagcaagccatgacg
tcagagttcaaggcctaccagatgcaggttcttgctaactgcaaatctctatccaatggc
cttattgaccacggttacaagattgtcactggcggctctgacaaccatctgatcttgctt
gaccttcgcaacaaagggactgatggaggacgagctgagaaggttttggaagcctgtgcc
attgcgtgtaataagaacacctgtccaggggataagagtgctctgcgccccagtggtctg
aggtttggctctccagcattgacctccagaggcatggtggaggatgatttcaagaaggtg
gcagagttcattcatagaggtattgagctgaccttggaggtgcagagaagcctggatccc
aaggccactctgaaggagtttattcaggcgctggccaagggggagaagttccagcagcgg
atttcagaaatcagggcagaggtggagggtttcgctggccagttcaccatgcctggccta
cccgagctgtag
DBGET
integrated database retrieval system
