Anoplopoma fimbria (sablefish): 129098859
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Entry
129098859 CDS
T09102
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129098859 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129098859 (xab2)
03041 Spliceosome [BR:
afb03041
]
129098859 (xab2)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129098859 (xab2)
Spliceosome [BR:
afb03041
]
Complex B
Other components
Prp19-related factors
129098859 (xab2)
Complex C
129098859 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
NRDE-2
TPR_MalT
SNAP
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
129098859
NCBI-ProteinID:
XP_054463954
LinkDB
All DBs
Position
11:13252273..13259885
Genome browser
AA seq
848 aa
AA seq
DB search
MPSLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNATKSTLNMIYERALKELP
GSYKLWYNYLRERRKQIKGKCVTEPGYEEVNNCHERALVFMHKMPRLWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKDEDEDIDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNPRQIINTYTEAVQTIDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
FKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVGTDERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLSDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMTSQMMKATTTSGTVADLAPGQLGIDDMKMLEQKAQMLAAEAEQD
KPKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDDEDEDDENQGPEEVQLEQKSVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccttcactaaacggaaaacccgatgttatgttcgaggacgatgatctgccatatgaa
gaggagatcatcaggaacccgtactcggtcaagtgctggatgcgttacatcgagttcaaa
cagaatgcaaccaaatccaccctcaacatgatctacgagcgggctctcaaagaactgcct
ggcagctacaagctgtggtacaattatctgagagagagacgtaaacaaatcaaaggaaaa
tgtgtcactgaaccaggctatgaagaggtcaataactgccatgaaagggcattggtgttc
atgcataagatgcccagattatggcttgattactgccagttccttgtgtctcaatgcaag
atcacaagaagtcggcaaacatttgaccgtgcactcagagctctccctgttactcagcac
ccgcgcatctggcctctgtatctccgctttgtccgtaaccttcccctgcctgagaccgca
atccgagtgtaccgccggtaccttaagctttctccagaaaatgcagaggaatacatagac
tacttaaggtctgttggccgcttggatgaagcagctgtgcgacttgcagctgttgtcaat
gacgaaagctttgtgtccaaagagggcaaatctaactatcagctgtggcatgagctgtgc
gacctgatctcccagaaccccgataaagtgacatcgctcaatgtaggggccatcatcaga
ggaggcctcactcgcttcacagaccagcttggaaaactctggtgttcgttagccgactat
tacattaggagtggtcactttgagaaggcccgtgatgtgtatgaggaggccatcctaacc
gttgtaacagtaagggatttcacacaggtgtttgatagttatgcccagtttgaggagagc
atgatcgcagcaaagatggagaccacagctgagatggggaaggatgaagatgaggacata
gacatggagcttagactggcccgctttgagcagctgatagcccggcggccacttcttttg
aacagtgttctactgcggcagaacccacataatgttcatgagtggcacaagcgggtaaaa
ttgtatgacggcaatccacggcagatcatcaacacatacactgaggctgtgcagactata
gatccaatgaaggccacggggaagcctcactctctctgggtttcctttgctaaattctat
gaggaaaatgagcagcttgatgatgccaggacaatttttgagaaggctaccaaggtgaac
ttcaagcaggtggatgacctcgctgcggtgtggtgtgaatatggagagatggagctacgc
catgagaactatgaacaggcgctgcgcatactgaggaaagctacagcaatcccatccaag
aaggcggagtactttgatgtatccgagccggttcaaaacagagtttacaagtctctgaag
gtctggtccatgctggcggacttggaggagagtctcggcactttccagtctaccaaagca
gtttatgatcgcatcatcgacctccgcatcgccacgccacagatcgtcatcaattatgcc
atgttcctcgaagagcacaactactttgaggaaagcttcaaagcctatgagcgcggtatt
gctctcttcaggtggccaaatgtttatgacatctggaacacttacctcaccaagtttatt
gatcgttatgggggcaagaagctggagagagctagagatttattcgaacaagccctggat
ggctgccctgccaagtttgcgaagaccatttacctgttgtatgccaaactggaggaggga
tatggattggcacgacacgccatggccgtctatgaaagagcaacgcaggcagtaggaact
gatgagaggcatcacatgttcaatatctacatcaagagagcagctgaaatttatggagtc
acgtataccagagccatttaccagaaggctatcgaggtcctttctgatgagcatgcaagg
gacatgtgtctgcgatttgccgacatggagagtaaacttggggagattgatcgtgccaga
gcaatctactcctactgctcgcagatttgcgacccaagggttactgcaacattctggcag
acctggaaagaatttgagatccgccatggaaatgaggacacgattagagaaatgctgagg
atcaaacgcagtgtccaagccacatacaacacccaggtcaactttatgacctctcagatg
atgaaggcaacaacaacctcaggcactgtggcagatcttgctccaggccagctgggaatt
gatgacatgaagatgctggagcagaaagcacagatgcttgctgctgaggccgagcaggac
aaacccaagcccaaagagaagattctctttgtcaggagtgacacctctcgcagcgagttg
gctgagctttccaaacaagccaatcctgatgagattgacattgatgatgacgaggatgaa
gatgatgaaaaccagggacccgaggaggtgcagcttgaacagaagagtgtccccacagct
gtcttcggagggcttaaagatgactaa
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