Anoplopoma fimbria (sablefish): 129098942
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Entry
129098942 CDS
T09102
Symbol
lrrc4ba
Name
(RefSeq) leucine-rich repeat-containing protein 4B isoform X1
KO
K16360
netrin-G3 ligand
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
129098942 (lrrc4ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
afb04515
]
129098942 (lrrc4ba)
Cell adhesion molecules [BR:
afb04515
]
Immunoglobulin superfamily
NGL family
129098942 (lrrc4ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_14
ig
LRR_9
V-set
Ig_2
LRRNT
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
129098942
NCBI-ProteinID:
XP_054464057
LinkDB
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Position
11:complement(3199380..3204760)
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AA seq
733 aa
AA seq
DB search
MRIATLTCLPGPSPFLFLLAQLLLRLLLPGPELVGAASSCPSLCTCSNQASRVICTRQNL
EEVPESISINTRYLNLQENSIQVIKSDTFKHLRHLEILQLSKNQIRQIEVGAFNGLPNLN
TLELFDNRLTLVPSHAFEYLSKLRELWLRNNPIETLPGYAFHRVPSLRRLDLGELKKLDF
ISDAAFVGLINLRYLNLGMCGLKDIPKLTALVRLEELELSGNKLEIIRPGSFQGLVSLRK
LWLMHSQVSVIERNAFDDLKSLEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWICNC
DVLWLSWWLKETVPSNTTCCARCHAPPFLKGKYIGELDQSHFTCYAPVIVEPPTDLNVTE
GMAAELKCRTSTSTTSVNWITPNGTLMTHGSYRVRISVLHDGTLNFTNVTLRDTGQYTCM
VTNAAGNTTATAVLNVTAADSSVNYTYFTTVTVETVETPGEEESALVAINETFIRVHPGP
TPSGHLWPEGVSTTASSLSSWSSSSPRATRPTFTAPITEPGFSGLDDVMKTTKIIIGCFV
AITFMAAVMLVVFYKLRKQHQLHKHHGPARAIEIINVEDELGAGASGRGSGISGGSTVTQ
SGSSGIGGGQSLRLHHPEIVNLPNLARSEHLNHYYKSHHFNNNMMSLGMGPASGVGLNNN
NNPSPCSQSQNTSISCSQVPTSGGPPSCGTLPSPVPLPQLGLHSSLKGLMGKSQKEPLLF
KSSSKENVQETQI
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgccacgttgacctgccttcccggcccttcccccttcctctttctattggcc
cagctgctactgcggctcctcctcccagggccggagttggtgggagccgcctcctcctgc
ccctccctctgcacctgctccaaccaggccagccgagtcatctgcaccaggcaaaacctg
gaggaggtgccagaaagcatatcaatcaacacacgatacctcaacctgcaggagaactcc
atccaggttatcaagtcagacactttcaagcacttgaggcaccttgagatcctccagctc
tccaagaatcagatccgtcagattgaagtcggagcattcaatggcctccccaacctcaac
acactggagctcttcgacaaccgcctcacactggtgccatcacatgcctttgagtacctc
agcaaactgcgggagctgtggctgcgcaacaaccccattgagactctgccgggctatgcc
ttccaccgtgtgccctcgctacgtcgcctggaccttggtgagctcaagaagttggatttc
atctctgacgcagcctttgttggcctcattaatctacgctacctgaacctgggcatgtgt
gggctgaaggacattcccaaactgacggcccttgtgcgtttggaggagctggaactgtca
ggaaacaaactggagatcatccgacccggttcgttccagggcctggtgtccctccgcaag
ctgtggcttatgcactcacaggtgtccgtcattgagcgcaacgccttcgatgacctgaaa
agcctggaagagctcaacctgtcacataactccctgcactccttgccccatgacctcttc
acgccccttcaccagctggagagagtacaccttaatcataacccatggatctgcaactgt
gatgtgctctggcttagttggtggttgaaagagacagtgcccagcaacaccacctgctgt
gcccgctgccatgctcctccattcttaaagggcaagtacattggagagcttgaccagagc
cacttcacctgctatgcgccggtcattgtggagccacctacagaccttaatgtcactgag
ggtatggctgctgagctcaagtgtcgcacaagcacctccacaacatctgtcaactggatc
acccctaatggcacactaatgacccacggctcttaccgggtgcggatatccgtcctgcat
gatggcacactcaacttcacgaatgtcaccctacgagataccggtcagtatacctgtatg
gtcaccaatgctgccggcaatacaacggcaactgctgtcctcaatgtcaccgctgctgat
tccagtgtcaactacacctacttcacaacagtcacagtggaaacagtggagaccccggga
gaagaagagtctgcattggtagcaatcaatgagacattcatccgtgttcaccctggcccc
acgccctcgggtcacctgtggccagaaggtgtttctactacagcctcctctctgtcaagc
tggtcctcctcctctcctcgagcaacacgacccacgttcactgcgcccatcactgagccg
ggcttctcgggcctggacgatgtgatgaagaccaccaagatcatcataggctgctttgta
gccattacctttatggcagcagtgatgcttgttgtgttctacaagctgaggaagcagcac
cagctgcataaacaccacggccctgctcgtgccatcgagatcatcaacgtggaggatgag
ctgggggccggggccagtggtcggggcagcggtatctcaggaggctccactgtgacgcag
agcggaagcagtggaataggagggggccagagcctcaggctgcaccacccggagatagtc
aacctgccgaacctggcgcgatcggagcacctcaaccactactacaaatcccatcacttc
aacaacaacatgatgagcttgggcatgggtccagcctctggtgtgggcctcaacaacaac
aacaacccctcaccttgctctcagtctcagaacacgtccatatcctgttcccaggttcca
accagtggaggaccgccatcatgtggcaccctgccgtcccctgtgcccctgccccagttg
ggtctccacagttctctgaaaggccttatggggaaaagccagaaagagcccctgcttttt
aagagcagctccaaggaaaatgtgcaagagactcaaatttga
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