Anoplopoma fimbria (sablefish): 129099157
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Entry
129099157 CDS
T09102
Symbol
top3a
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03440
Homologous recombination
afb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129099157 (top3a)
03460 Fanconi anemia pathway
129099157 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afb03032
]
129099157 (top3a)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129099157 (top3a)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
129099157 (top3a)
DNA replication proteins [BR:
afb03032
]
Eukaryotic type
DNA Topoisomerases
129099157 (top3a)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
129099157 (top3a)
FA (Fanconi anemia) pathway
129099157 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Lar_restr_allev
DUF6261
Motif
Other DBs
NCBI-GeneID:
129099157
NCBI-ProteinID:
XP_054464313
LinkDB
All DBs
Position
11:complement(23708943..23720667)
Genome browser
AA seq
1036 aa
AA seq
DB search
MLVQLLGRSLLRSGLQWLGVQGRRGLCAAQSDLCPDTQQQADMIRSRGQIRRVLCVAEKN
DAAKGISEIMSSGRSRRREGMSKFNKIYEFEYHLFGQDVTVTMTSVSGHLLGLEFKAQFQ
KWHSCNPVLLFDAEVEKYCPDNMKQIKRTLEKEVRQCQALVIWTDCDREGENIGFEIIDV
CKAVKPNLQVFRAKFSEITPNSIRRACETLMEPDANVSDAVDVRQELDLRIGASFTRFQT
LRLQKIFPQALANQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVLHEVEEDTVEF
SWKRNRLFNHTACLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVEMEKLASRKLKIS
AKETMKIAEKLYTQGYISYPRTETNIFPATLALGPLVEQQTQSPVWGTFAQRVMDQPGGP
NPRQGKKSDQAHPPIHPTKFSSTLQGNEGRLYEFIVRHFLACVSQDAAGQETVVDIDIAQ
ENFSASGLMIIARNYLDVYPYDRWSAKVIPVYEQGSQFQPSAVEMVDGQTSPPQLLTEAD
LISLMEKHGIGTDATHADHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKP
NLRAELEADLKLVSEGRKDKQSVLQNQIQKYKSVFIESVRKAKKLDEALSPYLGAAQEIA
EAEQQDMEMLLPVRKCPHCGQDMVLKKKKEGNSKYLSCAGFPACKTAVWFPDTVLEVSRD
DDICPTCQPHPVHMLKFKFRRGSLPPMMPLEFVGCIGGCDETLREVLDLKYLRAGGGGGV
EEGDGWRRGRKGRTTRRPSPTAPRPPRPEHPRPPSSNPRPSLPPVPSWTPQPRPPAGGAG
VRADPNSDVIVCNCGQDALLLTVRKDGPNQGRQFYKCNAGSCNFFLWADEPSQQGESQSR
GPPLEAPPRLSLGFRNPQEEAEGRKGAGGHAGQTMCNCNEAAVTRMVQKDGPNKGRMFHT
CGKPRDQTCGFFQWADENEPPPGVFGGGFNGGGDAGKKGMKITGDATANKPPAARKPRTC
GICHMPGHTRVTCPQR
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgctagtgcagctcctcgggagatctctgctccgatcgggattacagtggctcggggtc
caaggacggaggggcctctgtgcggcgcagagcgacctgtgtccggacacacagcagcag
gcagacatgatccggagccggggtcagatcagaagggtcctctgcgtggccgagaagaac
gacgctgccaaaggcatctcagagatcatgtccagcggcaggtccaggaggagagagggg
atgtcaaagtttaataaaatctatgagtttgaatatcatctctttggtcaggatgtgaca
gtaacaatgacttcagtgtcaggacatttactgggtctggagtttaaagcacagttccag
aaatggcacagttgcaatcctgtgctgttatttgatgctgaagtggagaagtactgtcca
gataacatgaaacaaatcaagcggacactggagaaagaggtgaggcagtgccaagcctta
gttatctggactgattgtgacagagagggagaaaacattggctttgaaatcatagatgtc
tgcaaagcagtgaagcccaatttacaagtatttcgggcaaagttttctgagatcaccccc
aactccattcggagagcttgtgagaccctaatggagccagatgctaacgtcagcgatgct
gttgatgtccgtcaggagctggacctgcgaataggtgcgtccttcactcgattccagaca
cttcggctgcagaagatcttcccacaggctctggccaatcagctgatctcatacggcagc
tgtcagtttcccactctgggttttgtggtggagcgtttcaaagccatccaggcgttcata
cctgagactttctacaagatcaaagtgctgcacgaggtggaggaggacactgtggagttc
agctggaaaagaaaccgtctcttcaaccacacagcttgcctggtgctctaccagatctgc
atggaggatcccatagcaacagtcacctcagtaaccagcaaacccaagagcaagtggaga
ccgctgcctttggacactgtggaaatggagaaacttgcatctcggaagctaaaaataagt
gccaaagagacaatgaaaattgcagagaaactctatacccaggggtatatcagctacccc
cgtactgagacaaacatttttcccgcaaccttggctctcggtcccctggtggagcagcag
acacaaagcccggtctgggggacgttcgcccagcgggtgatggaccagcctggcggtccc
aacccacgacagggcaagaaatctgaccaagcccatccccccatacaccccaccaagttc
tccagtacactgcaaggcaatgaaggacgtttgtatgagttcattgtccggcacttcctg
gcctgtgtatcccaggatgctgcggggcaggagaccgtggttgacatagacatcgcccag
gagaacttctccgcctcgggactcatgatcattgcaaggaactacttggacgtttacccg
tatgacaggtggagtgctaaggtgattccagtgtatgagcaaggctctcagttccagccc
tctgctgttgagatggtggacggacagacgagtcctcctcagctgctcactgaagccgac
ctcatatccctgatggagaagcatggcatcggcactgatgcaacccatgcagatcacata
gagactattaagagtcgcatgtatgtgggcttgacagctgatcagaggtttctgcctggg
gagctcggcatgggactggtggagggatacaactccatgggatatgaaatgtccaaacca
aacttgcgtgctgaattggaggcggaccttaagctggtatcagagggcagaaaggacaaa
cagagtgtgctgcagaaccaaatccagaaatacaagagcgtcttcatcgagtctgtcagg
aaagccaaaaagttggatgaagccctgtcgccatatctgggtgcagctcaggagatcgct
gaagcagagcagcaggacatggagatgctgctaccggtcaggaagtgccctcactgcggg
caggacatggtgctgaagaagaagaaggagggaaacagtaagtacctgtcctgtgcgggc
ttcccagcctgtaagacagcagtgtggttccccgacacggtgctggaggtgagcagagac
gacgacatctgtcccacctgtcagccgcaccctgttcacatgttaaagttcaagttccgc
agaggcagcctccctcccatgatgcctttagaatttgtcggctgcatcggtggatgtgac
gagacgctcagagaggtgctggacctgaagtaccttcgggcagggggaggtgggggggtg
gaggagggggatgggtggaggagggggaggaaggggaggacgacgagacgaccctcgccc
accgctccacggcccccaagaccagagcacccaagacccccgagttcaaatcctcgacct
tcccttcctccggtcccctcctggaccccgcagccacgacctccagcaggtggcgctggg
gtcagggcagaccccaacagcgatgtcattgtgtgtaactgtggtcaggatgcactcctc
ctaaccgtgcgcaaagatggtcccaaccaaggtcgtcagttctacaagtgcaacgctggg
agctgcaacttctttctgtgggcggatgagccgagtcagcagggggagtcgcagagccga
ggtcctccactggaagccccaccgaggctctctctggggttcaggaacccccaggaggaa
gcagagggcaggaagggtgcaggaggacatgcgggacagacgatgtgtaactgtaatgag
gcagcggtgacacgtatggtgcagaaggacggtccaaacaagggccggatgttccacacc
tgcgggaaaccaagagaccaaacgtgtggcttcttccagtgggccgatgagaacgaacct
ccaccaggtgtgtttggtggtggatttaatggtggtggcgacgcagggaagaagggaatg
aagataacgggagatgccaccgctaacaaacctccagctgctaggaaacctcggacctgc
ggcatctgccacatgccgggacacacccgagttacctgcccccagcggtga
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