Anoplopoma fimbria (sablefish): 129099333
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Entry
129099333 CDS
T09102
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129099333 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129099333 (pan2)
Enzymes [BR:
afb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129099333 (pan2)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129099333 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
129099333 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
129099333
NCBI-ProteinID:
XP_054464508
LinkDB
All DBs
Position
12:complement(16556682..16567579)
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AA seq
1210 aa
AA seq
DB search
MMNFDGLDAGMGEYQSSLHGTLEAVMEPSMDPHLNPNLMQGVELDPEGLAVSGPEPVHLM
EGMFSELHSAVSEGGIPVTATHFDLQEEMLWMGNHRGHVTSFFGPTMGRHSSFQASTSDD
IRHIQSLETGVLFLSKCNLKCHTRGGLVMFDYPMDEGADMHSLLMTDNNTLLMGGLQNYA
IELDLNTVQETQKFNVDVPGVAIMRQTGRFFFCGHTSGKITLRDLRSFKTEHEFDAFSGS
LSDFDVHGNLLAACGFSSRGMNGLACDRFLMVYDLRMMRAVTPLQVHVDPLFLRFIPTYT
SRLAIISQTGQCQFCEPTGLANMADIFHVNTVGQLLMSFDVSASKQALAFGDSGGCVHLW
SDAPEVSFNDYSRETEFALPCLVDTLPQLDWNHDLLPLSIIPTPLTSTEHLLSDWSAAMA
TPSPRRAPPVDPEILRTMKTVGFIGYAANPRTRPRNQVPYKIKDVELDYDNYNQVPESPI
GRDEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVLY
FLEPIRCIVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLI
LADSDEQTGKARLGRLIQSWNRFILTQLHQETQEQEGPQAYRGASSSSLGSSGESAIGKL
FGCEVENSSLCRCGKETVRSSLSLLFTMHYPEQNSQEKTVKEYDFAEILKKSICLEQSTQ
AWCENCEKYQPTVQTRNIRCLPDVLVINCEVNSVKEAEFWKVQAEYAFNKAMQKEAMEPP
KPKEPPPMPTEWCLDGEGICNMEGITFDTRAEDLRHVWIPLALKMCISKSQGLEISSWPE
GEELSDAEEEEGASVYDLVVTVPHILDARTGGNLVAHIKVGETYHIRKEGVTHQQWYLFN
DFLIEPIDKTEAAQFDVSWKVPGILYYAKRNHHTKYDLRIKNPIDASVLLTEASLARKQR
KSHATFIPLMVSEMPQAGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVR
GQGPNEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLID
TGVRFVGHGLQKDFRVINLLVLKDQVVDTVYLFHLPRKRMISLRFLAWYFLELSIQGETH
DSIEDARTALQLYRKYLELSRGGGNDEVRKVLKGLYEKGRQLDWKVPESETGDGQGSPKS
AAVFPSVMGL
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgatgaactttgacggtctggacgcggggatgggtgagtaccagtccagcctccacggg
accctggaagcggtgatggagccctccatggacccccacctgaaccccaacctaatgcag
ggtgtggagctggacccagagggactcgccgtgtcaggtcccgagcctgtgcacctcatg
gaggggatgttttctgaactacacagtgcagtttcagaaggtggcatcccagtcacagcg
acgcattttgatctccaggaggaaatgctatggatgggaaaccacagaggtcatgtcacc
tcattctttggacctacaatgggccgccattcctctttccaagcgagtacatcagatgac
atccgacacattcagagtttggaaacaggcgtcctgttcctttccaagtgtaacctcaaa
tgccacactcgcgggggccttgttatgtttgattacccgatggatgaaggagctgatatg
cacagtctcctcatgactgataacaacaccttgctcatgggtgggctgcaaaactatgcg
attgaacttgacttgaatacggttcaagaaacccaaaagttcaatgttgatgtacctgga
gtggcaattatgcgccaaaccggtcgtttcttcttctgtggtcacacttctggcaagatt
acccttcgggacttgcgtagcttcaaaacagagcacgagtttgatgcgttctctggcagc
ctctcagattttgacgtgcatggaaaccttctggctgcgtgtggattctccagccgagga
atgaacgggttggcatgcgaccgattcctcatggtgtatgaccttcgtatgatgcgagca
gtaaccccacttcaggtgcatgtggaccctctgttcttgcgcttcattccgacctacacg
tcacgcctggcgatcatctcacagacaggtcagtgccagttctgtgagcccactggtctc
gccaatatggcggacatttttcacgtcaacaccgtgggccagctgctcatgagttttgat
gtatcggccagcaaacaagccctggccttcggggactcggggggatgtgttcacctgtgg
tctgacgctccagaggtttcctttaatgactactcccgggagacagagtttgctctgcct
tgccttgtggacacgctgcctcagctggactggaaccacgatctgctgcccctctcgatt
atccccacgccgctgaccagcacagagcatctgctgtcagactggtccgctgcaatggct
acacccagccccagacgagctcctcctgtggacccagaaatcctgcgcaccatgaaaact
gttgggttcattggttatgcagcaaatcctcgtacccgccctcggaaccaggttccttac
aaaattaaagatgtggagcttgattatgataattacaaccaggtccctgaatcaccaatt
ggacgtgatgaagagccacatctctacatggtgccgaaaaagtacagaaaggtcacaatt
aaatattctaaacttggactggaggactttgacttcaaacattacaacagaaccttgttt
gctggtctggagcctcacatccccaatgcctactgcaactgcatgatccaggtattatat
ttcttggagccaatccggtgtatagtgcaaaatcatttgtgccagaaggagttttgcttg
gcctgtgagcttggcttcctcttccacatgttggatttgtcacgaggagatccatgtcag
gccagtaacttcctccgagcgtttcgtaccatcccagaagcctcagcgctcggtctgatc
ctcgcagactcagatgagcaaacggggaaggccagactcggtcgcttaatccagagctgg
aaccgcttcatcctcacccagctccaccaggagacgcaggagcaggagggcccacaggcc
tacaggggagccagcagcagttctctgggttcttctggtgagtccgccatcggaaaactc
tttggatgtgaagttgagaacagcagcctgtgtcgctgtggcaaggagacggtccgctcc
tccctctcgctactcttcaccatgcattaccccgaacagaactctcaagaaaaaacagta
aaagaatatgactttgctgagatcttgaagaaaagcatctgtctggagcagagcactcag
gcgtggtgtgaaaactgtgagaagtatcaacccacagttcagacacgcaacattcgatgt
ctcccagatgttctggtcatcaactgtgaggtaaacagtgttaaagaggcggaattctgg
aaggttcaggcggagtacgccttcaataaggccatgcagaaagaagcaatggaacctcca
aaacctaaagaacccccgcccatgcccaccgagtggtgcttggacggggagggcatttgc
aatatggagggcatcaccttcgacacgcgagcagaggatctgcgacacgtctggatccct
ctggctctcaagatgtgcatcagcaaaagtcagggactggagatcagcagctggcctgaa
ggagaggagttaagtgatgctgaagaggaggagggcgcatcggtctacgacttggtggtc
acggtgcctcacatcctggacgctcgcacaggtggaaacttggttgcgcacatcaaagta
ggagagacctaccatataagaaaagagggagtcacacatcagcagtggtacctcttcaat
gatttcctaattgagccaattgacaagactgaagctgcccagtttgatgtgagctggaaa
gtgccaggcattctgtattatgccaagaggaaccaccacaccaaatacgacctccgcatc
aaaaatcccatagatgccagcgtgctgctgacggaggcctcgttggctcggaagcagagg
aagagccacgccactttcatccccctcatggtcagcgagatgccgcaggccggagacttg
gtggggctggacgctgagtttgtcacactcaaccaggaagaggcggagcttcgcagtgac
ggcaccaagtcgaccatcaagcccagtcagatgtccgtggccaggatcacctgtgtgagg
ggtcaggggcccaacgagggggtgcccttcatcgatgactacatatccactcaggagcag
gtggtcgactatttgacacaatattctggcatcaaaccgggagacctggatgcaaagatt
tcctcaaagcatttgaccacactgaagtccacttacctaaagctgcgcttcctcattgac
acaggagttcgctttgttggtcacggcttacagaaggactttcgggttattaatttactg
gttctgaaagaccaagtcgttgacaccgtctacctgttccatttaccccgcaaaaggatg
atttctctgagatttctcgcctggtactttctagaactcagcatccagggggaaacccac
gacagcatagaggatgcacgcaccgctctgcagctgtacaggaagtacctggagctgagt
cgcggaggggggaacgacgaagtgaggaaggtcctcaagggactctacgaaaaaggtcgc
cagctggactggaaagtcccggaatcggaaaccggagatggtcaaggtagcccaaaaagt
gctgctgtgtttccctctgtgatggggctgtga
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