Anoplopoma fimbria (sablefish): 129099426
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Entry
129099426 CDS
T09102
Symbol
clstn1
Name
(RefSeq) calsyntenin-1
KO
K22659
calsyntenin 1
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
afb04515
]
129099426 (clstn1)
Cell adhesion molecules [BR:
afb04515
]
Cadherins
Cadherin related
129099426 (clstn1)
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Paralog
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
CDC45
Laminin_G_3
FAM176
Laminin_G_2
V_ATPase_I
EphA2_TM
Cadherin_C_2
PFF1_TM
TMEM132_C
Motif
Other DBs
NCBI-GeneID:
129099426
NCBI-ProteinID:
XP_054464637
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All DBs
Position
12:complement(11120048..11153095)
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AA seq
981 aa
AA seq
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MRFRGNTQCASAVGLVLGLLCAVEAAKVNKHKPWIETTYHGIVTENDDKVLLDPPLIALD
KDAPLRYAESFEVTLTEEGEICGFRIHGQNVPFEAVVLDKSTGEGVIRAKDKLDCELQKE
HTFTIQAYDCGEGPDGANMKKSHKATVHIQVNDINEYSPVFKEKSYKATVIEGKKYDSIL
KVEAVDADCSFQFSQICNYEIITPDVPFTVDKDGFIKNTEKLSYGKERMYKLTVTAYDCG
KNRASEDVLVKISVKPTCKPSWQGFNKRIEYEPGTGSLALFPSMHLETCDEPITSIRANI
DLETNHIGKGCDRDTYSEKSLHKLCGASTGTVELLPAPSSSANWTVGLPTDNGHDSDQVF
EFNGTQAIRVPEGMVSTSLKEPFTLSVWMRHGPGAHEKETILCNSDKTEMNRHHYSLYVH
NCRLILLLRQDPSEAENYKPAEFHWKLDQACDKEWHHYVLNVELPTVSLFVDGTTFEPFL
VTEDYPLHSSKIESQLTIGACWQDNSGHDNDTESVSEPASGGNARMAQFFRGNLAGLMIR
SGKLENKKVIDCLYTCKEGLDVQLPEEVASAVKVEFNPNQSSLTVEGDDIDAFDKVMQHI
SYLNSRQFPTPGIRHLRISTTVKCFNEESCVTVPDAEGYVMVLQPEEPKISLSGIDHFAR
SAAEFESQEGVTLFPELRIVSTITREVEADTESEAAEGADDDPTVQETVVSEEIMHNLDT
CEVSVVGDELDGEHEGLEVDMPQLQQHGLEMSSSNLGLVITGVNTMANYEQVLHLIRYKN
WHTEALFDRKFKLVCSELNGRYISNDFKVEVNVIHTANPVEHANNAIVQPNFINPVHHAS
VDLSGHNLVNAHQASVVPSAATIVIVVCVSFLVFMIILGVFRIRAAHQRTMGDQENGKEN
EMDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEDGEEEDDITSAESESSEDEEGAEP
EDQQAASRQQQLEWDDSTLTY
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgcggttccgagggaatacacaatgcgcatccgcggtcggactggtcctcggactatta
tgtgcggtggaggcagcgaaagtcaataagcacaaaccatggatcgagacgacataccac
gggatcgtaacggaaaacgatgacaaagtacttctggaccctcctctaattgcactggac
aaggatgctcctctacgctacgcagagagttttgaggtgaccctcaccgaagaaggtgag
atttgcggtttccggatccacgggcagaatgtccccttcgaggcagtggtcctggacaag
tccactggcgagggggtcatccgagccaaggacaagctggactgcgagctgcagaaggag
cacaccttcaccatccaagcctacgactgcggagagggtcccgatggcgccaacatgaag
aaatcccacaaggccactgtccacatccaggtaaatgacatcaatgagtattcaccagtg
ttcaaggagaagtcctacaaagccaccgttatcgagggaaagaagtacgacagcatcctg
aaggtggaggcagttgatgctgactgctctttccagttcagccaaatctgcaactacgag
atcatcactcctgatgtgcccttcaccgtcgacaaagatggcttcatcaaaaacacagag
aaactgagctacggcaaggagcgcatgtacaaactgactgtgacagcctacgactgtgga
aagaaccgagcctccgaggacgttttggtcaagataagcgtcaagcccacctgcaaaccc
agctggcaaggcttcaacaagaggattgaatacgagcctggcacagggagcctggctctt
ttccccagcatgcacttggagacctgcgatgagccaatcacgtccatccgtgccaacatt
gacctggaaaccaaccacattggcaagggctgcgaccgtgatacctactctgagaagtct
ctgcacaagctgtgcggagccagcaccggcaccgtggagcttctgcctgcacccagcagc
tccgcaaactggactgtagggctgcccactgataacgggcatgacagcgaccaggtgttt
gagttcaatggcacccaggccatcagggtcccagaaggcatggtgagcaccagcctgaag
gagcccttcaccctctctgtgtggatgagacatggccccggggcccatgagaaggagacc
attctctgcaactctgacaagacagagatgaacagacaccactactcgctgtacgtccac
aactgcaggctgatcctcctcctgcgccaggatccatcagaggcagagaactacaaacca
gccgagtttcactggaaactcgaccaggcgtgtgacaaagagtggcatcactatgtgctg
aatgtggagctccccactgtgtctctgtttgtggatggcactacatttgagcccttcctg
gttacagaggactacccactgcactcctccaagatcgagagccagctcaccattggtgcc
tgctggcaagacaactcaggacatgacaatgacactgagtcagtctctgagcccgcctca
ggtggaaatgctagaatggctcagtttttccgggggaacctggcggggctgatgatccgc
tctggcaaactggagaacaagaaggtgatcgactgtttgtacacctgcaaggaaggacta
gacgtgcagctgcccgaggaggttgcttctgctgtcaaggttgagttcaaccccaaccag
tcctctctgaccgtggagggcgacgacattgatgcctttgacaaagtcatgcagcacatc
tcctacttgaactcccgccagttcccgacccctggcatcaggcaccttcgcatctccacc
accgtcaaatgtttcaacgaggagtcctgcgtcacagtgccagatgccgaaggttatgtg
atggtgctgcagcctgaggagcccaagatcagcctgagtggcatcgaccactttgcccgc
agcgctgccgaattcgagagccaggaaggtgtgacgctgttccccgaactacgcattgtg
agcaccatcacccgcgaagtggaggccgacactgagtccgaagcagcagagggagctgat
gatgaccctacagtccaagagacagtggtgtcagaagagatcatgcacaacctggacacg
tgtgaagtgagtgtggtgggagacgagctggacggggagcacgagggcctggaggtggac
atgccccagctgcagcagcatggcctggagatgagttcctctaacctgggcctcgtcatc
accggtgtgaacaccatggccaactacgagcaggtcctgcatcttatccgttacaagaac
tggcacactgaggccctctttgacaggaaattcaaactggtctgctccgagctcaacggt
cgctacatcagcaatgacttcaaggtcgaggtgaatgtcatccacacagccaatcctgtg
gagcatgccaacaacgccatagtgcagcccaacttcattaaccctgtgcatcatgcctct
gtggatctgtccggtcacaacctggtcaacgctcaccaggcctcagttgttcccagcgcc
gccaccattgtcattgtggtgtgtgtcagcttcctggtgtttatgatcatcctgggcgtg
ttccgcatccgagctgcacaccagcgcaccatgggagaccaggagaacggcaaggagaac
gagatggactgggacgactcagcgctcaccatcaccgtcaaccccatggagacgtacgag
gaccagcacagcagcgaggaggaggaggaagaggaggaggagagcgaagatggagaggag
gaagatgacatcacgagcgctgagtcagagagcagcgaggacgaggagggcgccgagccg
gaggaccagcaggcagccagcagacagcagcagctggagtgggacgactccaccctcact
tactaa
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