Anoplopoma fimbria (sablefish): 129099750
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Entry
129099750 CDS
T09102
Symbol
hdac6
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
afb01009
]
129099750 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129099750 (hdac6)
04131 Membrane trafficking [BR:
afb04131
]
129099750 (hdac6)
03036 Chromosome and associated proteins [BR:
afb03036
]
129099750 (hdac6)
Enzymes [BR:
afb01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
129099750 (hdac6)
Protein phosphatases and associated proteins [BR:
afb01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129099750 (hdac6)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
129099750 (hdac6)
Membrane trafficking [BR:
afb04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
129099750 (hdac6)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
129099750 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
129099750
NCBI-ProteinID:
XP_054465085
LinkDB
All DBs
Position
12:27542512..27552686
Genome browser
AA seq
1101 aa
AA seq
DB search
MWVRMQSGSDSPDPGLKSVRRSPRLSPQRSSKGKEGRKEGGGLKEVKRRGRMERSREEEE
LIDRLQTLDVSSRSEVRGTGLVYSEIFTLHQNLWDSSHPERPDRVTSIMEELDRQDLLSH
CTRVPPREAVEEDLLLVHKTQYVDLMKSTQKMKESELQELSEKYDSVYLHPESYQVCVSA
VGSVLQLVDQVMTSKLRNGFAVIRPPGHHAQSNESNGFCIFNNVAIAARYAQTRHSVRRV
LIVDWDVHHGQGIQYLFQEDPSVLYFSVHRYEQGSFWPHLSESDSQYVGSGRAEGRNINL
PWNKTGMTDADYIAAFQQLLLPVAYEFQPQLVLVSAGFDAAVGDQKGEMCVTPRCFHVLT
HMLMSLAEGRLVLALEGGYNLQSTAEGAAACVRALLGGACPPLTPPTAPSDSALQSISQT
VSALYPHWASLQTLEGGPLADGRVMRTTTNKQSTKLPGPAPSVATVTGLVYDERMMEHLN
MWDRHHPEQPQRIFKIFSKHQQLGLVDRCQRIPARLATEEELSRCHSVQHIEQMKATAVM
KPRDLHKLGHEFNSIFINNQSFQSALLAAGGCFTAVERVLTGQVSNGVAIVRPPGHHAER
DSPCGFCFFNTAALAARHAQKISHDAPLRVLILDWDVHHGNGTQHMFEDDDSVLYISLHR
YDNGMFFPSSEDAAPDRVGISRGAGFNVNVAWSGGQMGDSDYLAAFHNVVMPIATEFNPG
LVLVSAGFDAARGDPLGGYHVTPEGYAHLTHLLTSLAGGXVLLILEGGYNLSSISDSMAM
CTSVLLGDPPPSLATPLPPPHYSAVATINEVIRHHAPYWKSLRIHIPESVRSSLPALKHR
GKRSSKGKGRKSETSGTNKPPLPPAGLEDRMTEPGLEQLTQGLASLDISQTSANHTPATS
DAVGGARPKVRLSQEEVTCEGEATPEQSQSAASTELQPQAVAVAAPESVAPGDEDAGRMG
AEPETEGACGWSKPETSLELMCGGQTDTPLFVVDPLSWCPHLDAVKPLPPSGIDVFQSCQ
DCGSDAENWTCLTCYQVFCGRYVNEHMVTHGVVSEHPMVLSFCDLSVWCYLCESYVHHQI
LFEAKNAAHCTKFGEEIPPWS
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgtgggtcagaatgcagtctggatcagactctccagatcctggactgaagtcagtccga
agatctccccgtctgtctcctcagaggagcagtaaaggaaaggagggaaggaaagaagga
ggcggcctgaaggaggtgaagaggagaggaaggatggagaggagccgagaggaggaggag
cttatcgaccgcctgcagacgctggacgtgtccagcaggtcagaggtcagaggaacaggt
ctggtttactctgagatcttcactctgcatcagaacctgtgggactccagtcatccagag
agacccgacagagtgacgtccatcatggaggagctggacagacaggacctgctgtctcac
tgcaccagagttccgcccagagaagctgtagaagaagatctgctgctagttcacaagaca
caatatgttgatctgatgaagtcgactcagaagatgaaagaaagtgaacttcaggaactg
tctgagaaatacgactctgtgtaccttcatcctgagtcctaccaggtgtgtgtgtctgcg
gtgggttcagtcctccagctggtcgatcaggtgatgacctccaaactcaggaacggattc
gctgtcatcagacctccaggtcatcatgctcagtctaacgagtccaacggtttctgtatt
ttcaacaacgtggcgattgcagctcgatacgctcagaccagacactcagtccgcagggtc
ttgatagtggactgggatgttcatcatggtcagggcattcagtacctgttccaggaggac
cccagtgtcctgtacttcagtgtccacaggtatgaacaggggtctttctggcctcacctg
tcagagtctgacagtcagtatgttggcagcggacgagctgaaggcagaaacatcaacctg
ccctggaacaagacggggatgacagatgctgattacatcgcagcttttcaacagctgcta
cttcctgtagcttatgagtttcagcctcagctggttctggtttctgctggatttgatgct
gcagtcggagaccagaagggggagatgtgtgtgactcctaggtgttttcatgttctgact
cacatgctcatgagtttggcagaaggtcgacttgttcttgctctcgagggaggttataac
ctgcagtcgacagcagagggcgctgcagcctgtgtcagagctctgctgggaggagcctgt
cctcctctgaccccgcccaccgctccctctgacagtgctctgcagtccatctctcagacc
gtctcggctctgtatcctcactgggcgtctctgcaaacactggaaggcggcccattggct
gacggccgtgtcatgagaacaaccaccaataagcagagcacaaagctgccgggcccggct
ccctctgttgccacggttacaggtctggtctatgacgagaggatgatggagcacctgaac
atgtgggacagacatcatcctgaacagccgcagagaatctttaaaatcttctctaaacat
cagcagctgggattggtcgatcgttgccaacggataccagctcgcttagcaacagaagag
gagttgtccaggtgtcacagtgtgcagcatattgagcagatgaaggccacagcagtgatg
aagcccagagatcttcacaaactgggtcacgagttcaactccatcttcatcaacaaccag
agcttccagtctgctctactggctgctggaggctgtttcactgctgtggagagagtcctc
acaggacaggtgagtaacggcgtggcgatcgttcgtcctcctggtcatcacgcagagaga
gattctccgtgtggtttctgtttcttcaacacagcagctcttgctgctcgacacgcccag
aaaatatcccatgatgcaccgctgcgagtcctcatcctcgactgggacgttcaccacggc
aacgggacgcagcacatgttcgaggatgacgacagcgtcctctacatctccctccatcgc
tatgacaacgggatgttcttcccgtcttcagaagacgcagcccccgacagggtgggcatt
tccaggggggcggggtttaacgtcaatgtggcgtggagcggcgggcagatgggagactcg
gactacctggctgcctttcacaacgtcgtcatgccgatcgctaccgagtttaatcctggt
ctggttctggtgtcggccggtttcgatgcagctcgaggggatccactgggaggatatcat
gtgactcctgagggatacgcccatctcactcacctgctgacgtcactggccgggggcngg
gtcctcctgatactggagggaggttataacctgtcttctatctcggactccatggcgatg
tgcaccagcgtgttgctaggagaccctcctccgtccttagcgacgcccctcccccctcct
cattacagcgccgtggcaacgatcaacgaggtcatccgacaccacgccccctactggaag
tctctgaggatacacatcccagagtcggtgcgatcctccctgccggccctgaagcatcgt
gggaaacgtagttctaaagggaaaggcaggaagtcagagacgagcggcacaaacaaacct
ccgctgccccctgcaggactggaggacaggatgacggagccaggtctagagcagctcact
cagggattggccagtttggacataagtcaaacctcagccaatcacactcctgctacatct
gacgcggtgggcggggccagaccgaaggtccgcctcagccaggaagaggtgacctgtgaa
ggggaagccacacctgagcagagccaatcagcagcgagcacagagctgcagccccaggct
gttgccgtggcagcaccagagtcggttgcccctggagatgaggatgctggtagaatgggg
gcggagccagagacggagggagcgtgtggttggtcgaaacctgagacgtctctggaactg
atgtgtggaggacagacggatacccctctgttcgtggtggaccctctttcctggtgtcct
cacctggatgctgttaagcccctccccccctcaggtatagacgtcttccagtcgtgtcag
gactgcggctccgacgctgagaactggacctgtctcacctgctaccaggtgttctgtggt
cgttatgtaaatgagcacatggtgactcacggcgttgtgtctgaacacccgatggtcctg
agcttctgtgacctgtctgtgtggtgctacctgtgtgagtcctacgtccaccaccagatt
ctgtttgaagctaaaaatgctgctcactgcaccaagtttggagaggagatccctccatgg
agctga
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integrated database retrieval system
