Anoplopoma fimbria (sablefish): 129099812
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Entry
129099812 CDS
T09102
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129099812 (ddx20)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129099812 (ddx20)
Spliceosome [BR:
afb03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
129099812 (ddx20)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CENP-B_dimeris
CMS1
Motif
Other DBs
NCBI-GeneID:
129099812
NCBI-ProteinID:
XP_054465173
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Position
12:25720146..25728073
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AA seq
792 aa
AA seq
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MAASVRKAAHDIETRTRTDDVLLSEGIDFGSLLLSRAVLDGLTSAGFRRPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFCTVALDSLVLENPATQVLVLAPTREIAVQIHSVVMAIGC
SMEGLECHVFIGGRPVSQDKVHLKKCHVAVGSPGRIKQLIELGMLSTASIRLFVLDEADK
LLEEGSFQDQINWIFSSLPVNKQMLALSATYPESLAQHLTRYMREPTFVRLNPSDMGLKG
LKQYYKLVPSHPLPHKIFQEKVQLLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLP
AACISGGLSQDQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGLAVTYCCHGEEENKMMAIAQKCGLSLSMLPSVIEPALMDEPCDWDVCT
EASTAGLSTQLSSGTQKKKKKLQRDEDQSVERRDQRKPEKTVQTSAPRVYDHERPRRASP
AEDALPQRRPPPPPPPASATRKELQDALPKIPPLSSFKSRRSRFVTLEEAERDFSRFITA
GPGRSVEVIREFRGGEDGDQSGHRETFTLHDQDGGEQLKLKRERQRCDLLPQRSVSGSPS
SQPDEDDEDDEDDQKNRTRGGECRAIKTEARETPTTTKPKAATATSRAVTASTPQMYRHT
SCASRGRAPSPPERRESRPAIEPTGPKSSRQESRKIQEKTWKQSKKVSEQKRERDDSEEE
EDEEEEEEEEEEEEEEWSAEAYWRASYRAWNDYYASMSPLQQRGHQSYYSAAQDWMAAYR
MNAVYVEELLKH
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctccgtgaggaaggcagcgcacgacatagagacgcggactcggaccgacgac
gtgcttctctcggagggaatcgacttcggctccctgctgctctcccgggcggtgctggac
ggactgacctccgcgggcttccgtaggccgtccccgatccagctgaaggcgatcccgctg
ggccgctgcggactcgacctgattgttcaggccaagtccggcacggggaagacatgcgtg
ttctgcaccgtcgccctggactctctggtcctggagaatcctgcaactcaggttctggtc
ctggctccgacccgtgagatagcggtgcagatccactcggtggtgatggccatcggctgc
tccatggagggcctcgagtgccacgtgttcatcgggggccggcctgtgagtcaggacaaa
gtccatctgaagaagtgccacgtggcggtgggttcacccggtcggatcaagcagctcatc
gagctcggcatgttgtccaccgccagcatccgactgtttgttctggacgaggccgacaag
ctgctggaggagggaagcttccaggaccagatcaactggatcttctcctctctgcccgtg
aacaaacagatgctcgctctctccgccacctacccagaatcccttgctcagcacctcacc
cgctacatgagggagcccacgtttgtccgactcaatcccagcgacatgggcctcaaaggt
ctgaagcagtactacaagctggttccgtcccatcctctccctcacaagatcttccaggag
aaggtgcagctcttgttggagctcttcagtaaaatcccgttcaaccaggctctggtgttc
tccaacctccacaccagggctcagcacctggcagacatcctgtcctctaaaggcctccct
gctgcttgtatctcaggcggtctgagtcaggaccagagactggaggccatgtccaaactg
aagcagtaccagtgcagggtgctcatctccacggacctgacctccagaggtatcgatgca
gagaaggtgaacttggtgatcaacctggacgtgccccaggactgggagacctacatgcac
cggattggacgcgccggacgctttggcactcagggtctggctgtgacctactgttgccat
ggcgaggaggagaacaagatgatggccatagctcagaagtgcggcctgagtttgtccatg
ttgccatccgtcatcgagccggcgttgatggacgagccgtgtgactgggacgtctgcacc
gaggcgtccaccgcgggcctctcaacccagctctcctccgggactcagaagaagaagaag
aagctgcagcgtgacgaggatcaaagtgtggagcgcagagatcaaaggaagccggagaag
accgtccaaacgtctgctccacgagtatacgaccacgagagacccagaagagcgtctccc
gctgaggacgctctcccgcagcgtcgtcctcctcctcctcctcctccggcatcggcgact
cgcaaagagctgcaggacgctctgccgaagatccctcctctgagctccttcaagagtcgc
aggtcgaggttcgtgaccttggaggaggccgagcgggacttcagtaggttcatcacggcg
gggccggggaggtcggtggaggtcatcagggagttcagaggcggagaggacggagaccag
agcggacacagagagaccttcacgctccacgaccaagacggaggagaacagttaaaacta
aagagagaacggcagagatgtgaccttttgcctcagaggtcggtttctggttctccgagc
tcgcaaccggacgaggacgacgaggacgacgaggacgaccagaagaatcgtaccagagga
ggcgagtgcagagcgatcaagactgaagccagagaaacgcccaccacgaccaaaccaaag
gcagcgaccgccacatccagagctgtcactgcttctacgccccaaatgtatcgccacaca
tcctgcgcctcacgaggaagagctccgtctccacccgagagacgggaatccagaccggcc
atcgaaccgacgggcccgaagagcagcagacaggaatccagaaagattcaagagaagact
tggaaacagagcaagaaggtatcggagcagaagagagaaagggatgacagcgaggaggag
gaggatgaagaagaggaggaggaggaggaggaggaggaggaggaggagtggagcgctgaa
gcctactggagagccagctacagagcctggaacgactactacgcctccatgtctcctctc
cagcagcgaggtcaccagagctactacagcgccgcccaggactggatggcggcgtatcgt
atgaacgccgtctacgtggaggagctgctgaaacactga
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