Anoplopoma fimbria (sablefish): 129099818
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Entry
129099818 CDS
T09102
Symbol
xpc
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
129099818 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afb03400
]
129099818 (xpc)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
129099818 (xpc)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
129099818
NCBI-ProteinID:
XP_054465182
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Position
12:complement(1441832..1451733)
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AA seq
929 aa
AA seq
DB search
MAKRRGCAEREADTKKQLLKPKRAGAAARRRRRKKEEDAEEEEKLKRKVKPKPRAPSKRA
PVNTSSTTSKTATAVKASKYFQSPVKXETDSEDDFDMVTSEAPAVKVNAKETKKEEEQEE
DSEEDEDDWEEVEELSEPLGPVEPPEPVLPSQPVEIEIETPEVRKKQKRQAEFETYMRRM
VNRLKKDVLIDTHKVHLLCLIASGMFRGRLCCEPDLLAITLSLLPNHFSSVAKERIDQNY
LSGLLKWFRSTFTLNSSLPCEERPDPRALLERRLASLSGRNHQEITHLFLLVMRSLQLSC
RLVLSLQPIPLKPPSAKGKGAGASTGSPGKTNTKKKTSKTTSPEQKVSPGTKRPAEGGKI
TGGRGGKKAKTKEIKEEYDEEKKVTKSSGGQRPKNSKRRSIASKVSYKEESDSEREKEEE
GLSEEEEFQATSEEDSEDSEGGRRGEKTKKGIRKSKVTNSKNIAAPKGRSGGGEKQIKDE
ESKECEEEGEDDEEEGTMPNRTKGRSGRKIKGPGADEWLEVYLVKTSSWVCVDVEHGVGM
PHLCSQSATAPITYVVSVDGDGFLKDLGRKYDPTWLTSSRKRRVDEDWWEETLEPFLRPE
DERDKREDKELQNKLLNKPLPISIAEYKNHPLYALKRHLLKYEAVYPSTATMLGYCRGEP
VYSRDCVHTLHSKDTWLKEARTVRLGEEPYKMVRGFSNRSRKARMASEQKDPNDLALFGE
WQTEEYQPPIAVDGKVPRNDFGNVYLFKPCMLPVGCVHLKLPNLNRVARKLNMDATPAVT
GFDFHGGYSHAVTEGYIVCEEHEEILRAAWVEEQDIQRQKEKEKKEKRVISNWTLLVKGL
LIKERLKQRYGQKNQGLVSLEETGGLSSDEEAVEGESPSAKTAAETLAMSWPQNRQAEED
GGSISGLKKNTTKREKTGQEKHLFPFEKA
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaggagaggctgtgcagagagagaggccgatacaaagaagcagctgctgaag
ccaaagagagccggagcagcagcgaggaggaggaggaggaagaaggaggaagatgcagag
gaagaagagaagctcaagaggaaggtcaaacccaaaccacgagccccctcaaaacgagcg
ccagtgaacacctcttccaccacttctaaaactgcaactgctgtcaaagccagtaaatac
ttccagtcgccagtgaagngggagactgacagtgaagatgattttgacatggtgacctca
gaagcacctgcggttaaagtgaacgccaaggaaaccaaaaaggaagaggagcaggaggag
gacagtgaggaagacgaggatgattgggaggaagtggaagagctttctgagccgctgggt
ccagttgaaccaccagaacccgtcctgccctcccagccggttgagatagagatcgagact
ccagaagtcaggaaaaagcaaaagaggcaggcagagtttgagacttacatgaggcggatg
gtgaaccggttgaagaaggacgtgctgatagacacacacaaggtccacctgttgtgcctg
atagccagcgggatgttccgcggccgtctgtgctgtgaaccggacttgctggccatcact
ctgtcgctgctgcccaatcacttcagctccgtcgccaaggaacgcatcgaccagaactac
ctctctggactgctcaaatggtttagatcaacgttcaccctaaactccagtcttccctgt
gaggagcgtccggacccccgcgctctgctggagaggcggctggccagcctgtctggcaga
aaccaccaggagattactcatctgttcctgttggtcatgaggtctctgcagctctcctgc
cgattggttctttctctgcagccgattcctctcaaacccccatcagccaagggcaaaggg
gctggggcatctactggttctccaggaaagaccaacacaaaaaagaaaacctccaagacc
acctcccctgagcagaaggtctcacctggcaccaagagaccggctgaaggggggaagatc
acgggaggccgaggaggaaagaaagcgaagacgaaagaaataaaggaagagtatgacgag
gaaaagaaggtgactaaatcttcgggagggcagaggccaaagaactcaaaacgtcgcagc
atcgcctctaaggtcagctacaaggaagaaagtgacagcgaacgggaaaaggaggaagag
gggcttagcgaagaggaggaatttcaggcgaccagtgaggaagacagtgaggattcagag
ggaggaagaaggggagaaaagacgaagaaggggataagaaaaagcaaagtgacaaacagc
aagaacattgcagctccgaagggaaggagtggtggaggggaaaaacagatcaaagacgag
gagagcaaagagtgtgaggaagagggggaagatgatgaggaagaaggaaccatgcctaac
cgaacaaagggaaggagtgggagaaagattaaggggcctggagcggacgagtggttggag
gtgtatctggtgaaaacttcatcctgggtttgcgtagacgtggagcacggcgtcgggatg
cctcacctctgctcccagagcgcaacggcgccgattacgtacgtggtgtcggtggacgga
gatggcttcttgaaggacttgggaaggaagtacgaccccacctggttgacatcttccagg
aagaggcgggtggatgaagattggtgggaagagacgcttgagccgttcctccggcctgag
gatgagagggacaaaagggaggataaggagctccagaacaaactgctgaacaaacccctg
cccatctcgatagcggagtataagaaccacccgctgtacgccttaaagagacacctgctg
aaatatgaggctgtctacccgtcaacggccaccatgctgggatactgcaggggagagccg
gtgtactccagggattgtgttcacacgctacactccaaagacacttggttgaaagaggcg
cggactgtcagactaggagaggaaccgtataagatggtgaggggcttctctaatcgttcc
cgcaaagccaggatggcatctgagcagaaggatccgaatgacctggctctgtttggagaa
tggcagactgaagagtaccagccgcctatagctgtggatgggaaggttccccgtaacgac
tttggtaacgtctacctgtttaagccctgtatgttaccggtgggctgtgttcacctcaag
ctgcccaacctgaaccgcgtggccaggaagctgaacatggacgccacccctgcggtcaca
ggcttcgacttccatggaggatactcacatgctgtgactgaaggttacattgtgtgtgag
gagcatgaagagattctcagagcggcctgggtggaagaacaagacattcagagacagaag
gagaaagagaaaaaagaaaagagagtgatctccaactggactctgctggtgaaggggctc
ctgatcaaagaaagacttaaacagcgctacggacagaagaaccagggactggtgagcctc
gaggagactggcgggctttcttcagatgaggaggcggttgagggtgaaagtccttcagct
aagacagcggctgagactctggccatgtcctggccccagaacagacaggcagaggaggac
ggaggcagcatcagcggactgaagaagaataccacaaaacgagaaaagacaggacaagag
aaacatttgttcccctttgagaaagcctga
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