Anoplopoma fimbria (sablefish): 129100029
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Entry
129100029 CDS
T09102
Symbol
copb1
Name
(RefSeq) coatomer subunit beta
KO
K17301
coatomer subunit beta
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129100029 (copb1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129100029 (copb1)
Membrane trafficking [BR:
afb04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
129100029 (copb1)
Exosome [BR:
afb04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
129100029 (copb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatomer_b_Cpla
Coatamer_beta_C
HEAT_2
Cnd1
HEAT
HEAT_EZ
Arm
MMS19_N
Motif
Other DBs
NCBI-GeneID:
129100029
NCBI-ProteinID:
XP_054465509
LinkDB
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Position
2:complement(19651016..19660794)
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AA seq
953 aa
AA seq
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MTAAENVCYTLINVSSDSEPPSEVSLKADLEKGEIKAKTEALKKVIIMILNGEKLPGLLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGKLLQEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKESELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVHTFGDILQLVIVELIYKVCHANPS
ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAVKAAAQCYIDLIIKESDNNVKLI
VLDRLIELKEHPTHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSSRNVEELVIVL
KKEVIKTNNVTEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDTNEAAAADV
LEFVREAIQRFESLRPLIIEKMLEVFHAIKTVKIYRGALWILGEYCSTKDDIQNVMTEVR
RSLGEIPIVENEIKRETGEVKPEDEVSAAPAQKLVTEMGTYVTQSALSSSRPSKKEEDRP
PLRGFLMDGDFYVAASLATTLTKVALRYVAIVQDKKKQNSFVAESMLIMVTVLHLGKSSL
PKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRRSLSHMLTVRLEEEKLSQKKESEK
RNVTVQADDPISFMQLTAKNEMTSKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPH
DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEF
RQMWAEFEWENKVTVNTNITDLNEYLQHILKSTNMKCLTPEKALSGFCGFMAANLYARSI
FGEDALANVSIEKPIHLGPDAPVNGHIRIRAKSQGMALSLGDKINLSQKKSNV
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgacagctgccgagaacgtttgttacactctgatcaatgtctcatctgactcagagccc
ccttctgaagtcagcctaaaagctgatctagaaaagggggagatcaaggcaaagaccgaa
gccctgaagaaggtcatcatcatgatcctgaatggggagaagttgccaggactgctgatg
accataatccgctttgtgctgccacttcaagaccacaccatcaaaaaactgctgctggtt
ttctgggagattgttcccaaaacaacgccagatggaaaactgcttcaggagatgatcctg
gtctgtgacgcctacaggaaggacctgcagcatcccaacgagttcatccgtggctccact
ctgcgtttcctgtgcaagctgaaggagtccgagttgctcgagcctctcatgccagcgatc
cgggcctgcctggagcaccgtcacagttatgtgcgccgcaatgccgtcctggccatctac
accatctacaggaacttcgaacatctcatcccagacgctccagagttgatccatgatttc
cttgtcaatgagaaagatgccagctgtaaaagaaatgctttcatgatgctgattcatgca
gatcaggaccgcgctctggattacctcagcacatgtatcgaccaagttcacacttttggc
gacattctccagctggtcattgtggagctgatttacaaagtttgccatgctaacccctct
gagcgcgctcggtttatccgatgcatctacaacctgctgcagtcgtccagtccggctgtt
aagtacgaggctgctggcacacttgtaaccctctccagtgctcccacagccgttaaggct
gctgcccagtgctacattgatttgattatcaaggagagcgacaacaacgtgaagctgatt
gttcttgatcgtctgattgagctgaaggagcaccccactcacgagcgtgtactccaggat
cttgtgatggacatcctgcgtgttctcagcactcctgacttggaagtgagaaagaagacc
ttgcagctggcactggaccttgtttcatcgcgcaatgttgaagagttggtgattgttttg
aagaaagaggtgatcaagacaaacaacgtaacagaacatgaagacactgataagtacagg
cagctgttggtgcgcactcttcactcctgtagtgtgcgcttccccgacatggcggccaat
gtcataccggtgctgatggagttcctaagtgacactaatgaggcggctgctgctgacgtc
ctggagtttgtacgggaggccattcagcggttcgaaagcttgagacccctcatcatcgag
aagatgctggaagtctttcacgccatcaaaactgtcaagatctacaggggagcgctgtgg
atcttgggagaatactgcagcaccaaggacgacatccagaatgtgatgacagaagtacgc
aggtccttgggcgagatcccgattgtagaaaatgagataaagagggagacgggagaggtg
aagccggaggatgaagtaagtgcggctccagcccagaagctggtgacagagatgggcacc
tatgtgacacagagtgccctcagctcctccaggccttcgaagaaagaagaggatagacct
ccactcagaggctttctgatggatggagacttctatgtggcagcttccctggccaccacc
ctgaccaaagtggccttgcgctatgttgctatagttcaagacaaaaagaaacaaaactct
tttgtcgcggagtcgatgctgatcatggtcaccgtgctgcacctcggcaagtcctcgctg
cccaagaagccaattacagacgatgacgtggaccgcatctcgctgtgcctcaaggttctg
tcagagtgctcgccacttatgaatgacattttcaacaaggagtgccgcagatctctgtca
catatgctgactgtcagactggaggaagagaagctgtcgcagaagaaagagtctgagaaa
cgcaacgtcacagtgcaggcagacgacccgatctccttcatgcagctcacagccaaaaac
gagatgacttctaaggaggaccagttccagctcagtctgctggctgctatgggcaacact
cagaggaaggaagctgctgatcccctggcttcaaaactcaacaaggtgacccagctgacg
ggcttctcagacccagtgtatgctgaagcctatgttcatgtcaaccagtatgacatcgtg
ttggacgtgctggtggtcaaccaaaccagtgatactctccagaattgcaccctggagctg
gccactttaggtgacctcaagttggttgagaagccttcacctttaactctggctcctcac
gactttgctaacatcaaggccaatgtcaaggtcgcttctactgagaacggcattatattt
ggcaacattgtctacgatgtgtcgggagcagctagcgaccgaaactgcgtcgtcctcagt
gacatccacattgacatcatggactacatccagccagcgtcctgcaccgatgcagaattc
agacagatgtgggcagagtttgagtgggaaaacaaggtaacggtgaacaccaacatcact
gatctgaacgagtaccttcagcatatcctgaagtccaccaacatgaagtgtctgactcct
gagaaggcactgtcgggcttctgcggcttcatggctgccaatctttacgctcgttctatc
tttggagaagacgccctggctaatgtcagcatcgagaagcccatccacctggggcctgac
gcacctgtcaacggacacatacgcataagagccaaaagtcaggggatggccttgagtctt
ggcgacaaaatcaacctctcccaaaagaagtcaaatgtctga
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