Anoplopoma fimbria (sablefish): 129100094
Help
Entry
129100094 CDS
T09102
Symbol
rfc2
Name
(RefSeq) replication factor C subunit 2 isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03030
DNA replication
afb03410
Base excision repair
afb03420
Nucleotide excision repair
afb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129100094 (rfc2)
03410 Base excision repair
129100094 (rfc2)
03420 Nucleotide excision repair
129100094 (rfc2)
03430 Mismatch repair
129100094 (rfc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afb03032
]
129100094 (rfc2)
03036 Chromosome and associated proteins [BR:
afb03036
]
129100094 (rfc2)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129100094 (rfc2)
DNA replication proteins [BR:
afb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
129100094 (rfc2)
DNA Replication Termination Factors
ELG1-RFC complex
129100094 (rfc2)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
129100094 (rfc2)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
129100094 (rfc2)
Check point factors
HRAD17(Rad24)-RFC complex
129100094 (rfc2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
nSTAND_NTPase5
AAA_lid_RFC1
AAA_22
RCF1-5-like_lid
AAA_14
AAA_16
AAA_11
Viral_helicase1
Mg_chelatase
Rad17
DEAD
AAA_assoc_2
AAA_19
MipZ
nSTAND3
AAA_5
RuvB_N
DNAX_ATPase_lid
AAA_30
AAA_18
MeaB
ABC_tran
MCM
AAA_24
SLFN-g3_helicase
AAA_25
AAA_28
RNA_helicase
AAA_23
NTPase_1
IstB_IS21
AAA_2
AMP-binding_C_3
PPR_1
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
129100094
NCBI-ProteinID:
XP_054465593
LinkDB
All DBs
Position
12:26415584..26420048
Genome browser
AA seq
350 aa
AA seq
DB search
MELQGTGAERELQPGDGAQRADAGGSGGRSQLPWVEKYRPLQLSSVVGNQETVSRLQVFA
REGNVPNVIIAGPPGTGKTTSILCLARALLGASMKDAVLELNASNERGIDVVRNKIKMFA
QQKVTLPKGRHKIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKIIEPIQSR
CAVLRYSKLTDGQILARLQEVVEQEQLSVSDDGLEAIIFTAQGDMRQALNNLQSTNSGFG
YINSENVFKVCDEPHPLLVKSMLGHCVDGNIDEAYKVVEQLWALGYSPEDIIGNIFRVCK
TYQMAEYLKLDFIKEIGYTHMRVSEGVNSLLQMAGLLGRLCSKTAPPAAS
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atggagctccaggggaccggggcagagcgggagctgcagccgggggacggcgctcagagg
gcggatgcaggaggcagcggaggccggtcccagctgccctgggtggagaagtacaggccg
ctgcagctgagcagcgtcgtggggaaccaggagaccgtgagccgcctgcaggtgttcgcc
agagaggggaacgtgcccaacgtcatcatagcaggtcctccaggaacaggaaagaccacc
agcatcctgtgtttggcccgagctctgctgggagcctccatgaaggacgccgtgctggag
ctcaacgcttcaaacgagagaggaatcgacgtggtgaggaacaagatcaagatgttcgct
cagcagaaagtcacgctgcccaaaggacgacacaagatcatcatcctggacgaagccgac
agcatgacggacggagcccagcaggccctgaggaggatcatggagatctactccaagacg
acgcgcttcgctctcgcctgcaacgcgtcggataagatcatcgagccgatccagtcccgc
tgcgccgtgctgagatactccaagctgacggacgggcagatcctggcccggctgcaggag
gtggtggagcaggagcaactgtcggtgtccgacgacgggctggaggccatcatcttcacc
gcgcagggagacatgagacaggcgttgaacaacctgcagtccaccaactccggcttcggc
tacatcaacagcgagaacgtcttcaaagtgtgcgacgagcctcacccgctgctggtgaaa
agcatgctgggacactgcgtggacgggaacatcgacgaggcctacaaggtggtggagcag
ctgtgggcgctgggctactctccagaggacatcatcgggaacatcttcagggtctgcaag
acataccagatggccgagtacctcaaactggacttcatcaaggagatcgggtacactcac
atgcgggtgtctgaaggcgtgaactctctgctgcagatggccggtctgctgggtcgactc
tgcagtaagacggcgccccctgctgccagctga
DBGET
integrated database retrieval system
