Anoplopoma fimbria (sablefish): 129100117
Help
Entry
129100117 CDS
T09102
Symbol
rnf41
Name
(RefSeq) E3 ubiquitin-protein ligase NRDP1
KO
K11981
E3 ubiquitin-protein ligase NRDP1 [EC:
2.3.2.27
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
129100117 (rnf41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129100117 (rnf41)
04121 Ubiquitin system [BR:
afb04121
]
129100117 (rnf41)
03029 Mitochondrial biogenesis [BR:
afb03029
]
129100117 (rnf41)
Enzymes [BR:
afb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129100117 (rnf41)
Membrane trafficking [BR:
afb04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
129100117 (rnf41)
Autophagy
Mitophagy
PINK1-Parkin associated proteins
129100117 (rnf41)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129100117 (rnf41)
Mitochondrial biogenesis [BR:
afb03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
129100117 (rnf41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP8_interact
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-RING_6
zf-rbx1
zf-Nse
zf-C3HC4_4
zf-C3HC4_3
zf-RING_UBOX
Sina_ZnF
zf-RING_5
U-box
zf-ANAPC11
zf-TRAF
SlyX
Trimer_CC
zf-RING_10
Rootletin
zf-TRAF_2
DUF641
Sos7
DFF-C
Laminin_II
zf-RING_16
zinc_ribbon_16
Motif
Other DBs
NCBI-GeneID:
129100117
NCBI-ProteinID:
XP_054465630
LinkDB
All DBs
Position
12:complement(16673115..16678282)
Genome browser
AA seq
318 aa
AA seq
DB search
MGYDITRFQGEVDEDLLCPICSGVLEEPVQAPHCEHAFCNACITQWFAQQQICPVDRTVV
TLAHLRPVPRIMRNMLSKLQISCDNAGFGCTATLRLDQLQSHLKDCEHNPKRPVNCEEGC
GLEMPKDEVPNHNCIKHLRSVVQQQQTKISELEKTVVEHKHQLGEQKRDIQLLKAYMRAI
RSANPNLQNLEESIEYNEILEWVNSMQPARVTRWGGMISTPDAVLQAVIKRSLIDSGCPL
SIVNDLIENAHERNWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGEDM
ILEPGLVMIFAHGVEEIL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggggtacgacattacgaggttccaaggggaggtggatgaagacctgctgtgccctata
tgtagtggagtgctcgaagaaccagtgcaggctccacactgtgagcatgccttctgcaat
gcctgtataacacagtggtttgcccagcagcagatatgtcctgttgaccgcacggtagtg
acgctagctcacctccggcctgtgccccgcatcatgcgcaacatgctgtccaaacttcag
atcagctgtgacaatgcgggttttggctgtacagccacactgcggctggaccagctgcaa
tcacacctcaaggactgcgagcacaaccccaagaggcctgtcaactgcgaggagggatgt
gggcttgagatgcccaaagatgaggtgcccaaccataactgcatcaaacatttgcggagc
gtcgtccagcagcaacagacgaagatttcggagctggagaaaacggttgtagagcataaa
caccagttgggggaacaaaaacgggacatacagctgctaaaagcctacatgagagcaatc
cgcagtgctaatcctaatctccaaaacctcgaggagagcattgagtacaacgagatcttg
gagtgggtgaactccatgcagcctgccagagtgacacgctggggtggcatgatctcaact
cccgacgctgtgcttcaagcagtcatcaaacgctcgctcatcgacagcggctgtcctctc
tcaatcgtgaacgacctgattgagaacgcccacgagcgaaactggccgcagggactggcc
acgctcgagacacggcagatgaacaggcgctactatgagaactacgttgccaagcgtatc
cctggcaagcaggcggtggtggtgatggcctgtgagaatcagcatatgggggaggacatg
atcctggagccgggcctggtcatgatctttgcgcacggtgtggaggagatcttataa
DBGET
integrated database retrieval system