KEGG   Anoplopoma fimbria (sablefish): 129100117
Entry
129100117         CDS       T09102                                 
Symbol
rnf41
Name
(RefSeq) E3 ubiquitin-protein ligase NRDP1
  KO
K11981  E3 ubiquitin-protein ligase NRDP1 [EC:2.3.2.27]
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:afb00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    129100117 (rnf41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:afb04131]
    129100117 (rnf41)
   04121 Ubiquitin system [BR:afb04121]
    129100117 (rnf41)
   03029 Mitochondrial biogenesis [BR:afb03029]
    129100117 (rnf41)
Enzymes [BR:afb01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     129100117 (rnf41)
Membrane trafficking [BR:afb04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    129100117 (rnf41)
 Autophagy
  Mitophagy
   PINK1-Parkin associated proteins
    129100117 (rnf41)
Ubiquitin system [BR:afb04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    129100117 (rnf41)
Mitochondrial biogenesis [BR:afb03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-dependent mechanism factors
    129100117 (rnf41)
SSDB
Motif
Pfam: USP8_interact zf-C3HC4_2 zf-RING_2 zf-C3HC4 zf-RING_6 zf-rbx1 zf-Nse zf-C3HC4_4 zf-C3HC4_3 zf-RING_UBOX Sina_ZnF zf-RING_5 U-box zf-ANAPC11 zf-TRAF SlyX Trimer_CC zf-RING_10 Rootletin zf-TRAF_2 DUF641 Sos7 DFF-C Laminin_II zf-RING_16 zinc_ribbon_16
Other DBs
NCBI-GeneID: 129100117
NCBI-ProteinID: XP_054465630
LinkDB
Position
12:complement(16673115..16678282)
AA seq 318 aa
MGYDITRFQGEVDEDLLCPICSGVLEEPVQAPHCEHAFCNACITQWFAQQQICPVDRTVV
TLAHLRPVPRIMRNMLSKLQISCDNAGFGCTATLRLDQLQSHLKDCEHNPKRPVNCEEGC
GLEMPKDEVPNHNCIKHLRSVVQQQQTKISELEKTVVEHKHQLGEQKRDIQLLKAYMRAI
RSANPNLQNLEESIEYNEILEWVNSMQPARVTRWGGMISTPDAVLQAVIKRSLIDSGCPL
SIVNDLIENAHERNWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGEDM
ILEPGLVMIFAHGVEEIL
NT seq 957 nt   +upstreamnt  +downstreamnt
atggggtacgacattacgaggttccaaggggaggtggatgaagacctgctgtgccctata
tgtagtggagtgctcgaagaaccagtgcaggctccacactgtgagcatgccttctgcaat
gcctgtataacacagtggtttgcccagcagcagatatgtcctgttgaccgcacggtagtg
acgctagctcacctccggcctgtgccccgcatcatgcgcaacatgctgtccaaacttcag
atcagctgtgacaatgcgggttttggctgtacagccacactgcggctggaccagctgcaa
tcacacctcaaggactgcgagcacaaccccaagaggcctgtcaactgcgaggagggatgt
gggcttgagatgcccaaagatgaggtgcccaaccataactgcatcaaacatttgcggagc
gtcgtccagcagcaacagacgaagatttcggagctggagaaaacggttgtagagcataaa
caccagttgggggaacaaaaacgggacatacagctgctaaaagcctacatgagagcaatc
cgcagtgctaatcctaatctccaaaacctcgaggagagcattgagtacaacgagatcttg
gagtgggtgaactccatgcagcctgccagagtgacacgctggggtggcatgatctcaact
cccgacgctgtgcttcaagcagtcatcaaacgctcgctcatcgacagcggctgtcctctc
tcaatcgtgaacgacctgattgagaacgcccacgagcgaaactggccgcagggactggcc
acgctcgagacacggcagatgaacaggcgctactatgagaactacgttgccaagcgtatc
cctggcaagcaggcggtggtggtgatggcctgtgagaatcagcatatgggggaggacatg
atcctggagccgggcctggtcatgatctttgcgcacggtgtggaggagatcttataa

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