Anoplopoma fimbria (sablefish): 129100399
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Entry
129100399 CDS
T09102
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03250
Viral life cycle - HIV-1
afb04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
129100399 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
129100399 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afb03400
]
129100399 (samhd1)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
129100399 (samhd1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
SAM_1
SAM_2
HD_assoc_2
PDEase_I
Motif
Other DBs
NCBI-GeneID:
129100399
NCBI-ProteinID:
XP_054465986
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Position
12:complement(25502765..25519376)
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AA seq
610 aa
AA seq
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MANRKRPLDAGSMPGDSCRTPEELQDRDYMRWEVDQTCRYLLAEGLGEWEETFRAQKITG
VGLRYLQDADLEKMGLQYLGDRLRVQHSLRKLWQIEAEPNKVFNDPIHGHVEVHPLLIKI
IDTPQFQRLRYLKQLGGAYFVFPGASHNRFEHCIGVGYLAGRLVQALNERQPELLISRRD
ILCVQIAGLCHDLGHGPFSHMYDGMFIPKARPGISWKHEKASLDMFDYLVADNELKPVME
QHGLVLPEDLDFIKEQIAGPAVSDAAQGPKWPYKGRPEDKSFLYEIVANKRNGIDVDKWD
YFARDCYHLGIQNNFDYRRFLKFARVCEVDGQKHICTRDKEVGNLYDMFHTRNCLHRRAY
QHKVGNIIETMITEAFLKADKHVQFEGTGGKMFTLSTAIDDMKAYTKLTDNVFEQILNSS
SPELKDSREILHNIVCRRLYKCLGQTQADESMSVTREKIQNWEAALAGSIPQSGAQDVSL
QPEDFIVSVIYMDYGMKEKNPINSVRFYCKDDPNKAIQIRKNQVSKLLPERFAEQLIRVY
CKKTDDRSLEAAKKHFVKWCMDENFSKPQDGDIIAPELTPLKESWSNDEGRKVNRVCVNG
QKRAKIQLFK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgaaagcggcctttggacgcgggttcgatgcccggtgacagctgcaggacg
ccagaggagctgcaggaccgggactacatgcgatgggaagtggaccaaacgtgtcggtac
ctgctggcagaagggctgggagaatgggaagagaccttcagagcgcaaaaaatcaccggt
gtcgggctgcggtatctacaggatgctgatctggagaagatgggcttgcagtacctcggt
gaccgtctgcgagttcaacacagcctcaggaagctgtggcagatagaagcagagccaaat
aaggtgtttaatgatcccattcatggtcatgtggaggtacaccctcttctcatcaaaatc
atcgacacacctcagttccagaggcttcgatacctcaagcagctcggaggggcctacttc
gtttttcctggagcatcccacaaccgcttcgaacactgcattggggtgggttacctggca
gggcgacttgttcaagctctgaacgagaggcagccagaactcctcatctctcgcagagac
atcctctgtgtgcagatcgccgggctctgccacgacctgggacatgggcccttttcacac
atgtatgacgggatgttcatccccaaagcacgtccaggaattagctggaagcacgagaaa
gcctctctcgacatgtttgactacctggtggctgacaacgagctgaagccggtgatggag
cagcacggcctggtgctgcccgaggacctggacttcattaaggagcagattgctggacca
gcggtctcggatgcagctcaaggcccgaagtggccatacaaaggccgtccagaagacaag
tccttcctctacgaaatcgtggccaacaaaagaaatggcattgatgtggacaagtgggac
tactttgccagggactgctaccacctgggcatccagaacaactttgactatcgccgcttc
ctaaagtttgccagggtgtgcgaggtggacgggcagaagcacatctgcaccagagacaag
gaagtgggcaatctgtacgacatgttccacacgaggaactgtctccacaggagagcctac
cagcacaaagtgggcaacatcatagagaccatgatcacagaggcctttttaaaagcagac
aagcacgtccagtttgaaggcacaggaggaaagatgttcactctctccacagccatagac
gacatgaaggcctacaccaagctgacagataatgtgtttgaacaaatactcaactcctcc
tccccggagctgaaggactcgagggagattctccacaacatcgtgtgtcgacgcctctac
aagtgtctcggccaaacgcaggcagacgaatccatgagtgtcacccgggagaagattcag
aactgggaagcagctctggctggatccatccctcagagcggcgcccaggacgtcagtctg
cagccggaggacttcatagtcagtgtcatctacatggactatgggatgaaggaaaagaac
cccatcaacagtgtgcgtttctattgcaaagatgacccaaacaaagccatccagatccgc
aagaaccaggtgtctaaacttctcccggagcggtttgcggagcagctgatcagggtctac
tgcaagaagaccgatgacaggagcctggaggcagccaagaagcactttgtcaagtggtgc
atggacgagaacttctcaaagcctcaggacggagacataatagcacccgagctgactcct
ctgaaagagagctggtcgaatgacgaaggaaggaaagtgaaccgtgtttgtgtaaacgga
cagaagagagccaaaattcagctttttaagtga
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