Anoplopoma fimbria (sablefish): 129100426
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Entry
129100426 CDS
T09102
Symbol
pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03015
mRNA surveillance pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129100426 (pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
129100426 (pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129100426 (pabpc1l)
03041 Spliceosome [BR:
afb03041
]
129100426 (pabpc1l)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129100426 (pabpc1l)
mRNA cycle factors
Stress granule specific factors
129100426 (pabpc1l)
Spliceosome [BR:
afb03041
]
Complex C
Other components
Complex C specific factors
129100426 (pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RBD_RDR6
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
129100426
NCBI-ProteinID:
XP_054466027
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All DBs
Position
12:complement(23680997..23690823)
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AA seq
626 aa
AA seq
DB search
MNSSGPSYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDEKGSKGYGFVHFETHEAANRAIDTMNGMLLNDRKVFVGHFKSRKERE
MEFGTKAMKFTNVYIKNFGEDYTDEKLKEVFNEFGRTLSVRVMKDERGRSRGFGFVNYFN
HEDAQKAVDEMNGKDLNGKVIYAGRAQKRMERQGELKRKFDQIKQDRIQRYQGVNLYVKN
LDDGIDDERLRKEFAPYGTITSAKVMTDGSQSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRREERKAILTNKYMQRLATLRTMTSPIIDSYQQGGYYMTVPQPPTRSFYNH
NTVSNMRPVPRWTGQPPRMQGPYSTQFVGNAVPRRGSTPIATVRQASTQAPRIISSSQKT
INIGTQTVGGRTDVPGMTRGAQYKYSSAVRNVQQVVTMPAPMTRIQVMPAPVMEQPVHLQ
GHDPLTTSMLAAAPLMDQKQLLGERLYPVIHSLHPNLAGKITGMLLEIDNSELLHMLETP
ESLHAKVDEAIAVLQAHQAKECSPKK
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggaccatcgtatcccctcgcctctctgtacgtaggggacctgcacccc
gacgtcacggaggccatgctctaccagaaattttctcccgctggtcccatcatgtcgatc
cgtgtgtgccgtgacatcatcacccgcagatctctgggatatgcttacattaacttccag
caaccagctgatgcggagtgcgccctggatacaatgaactatgacgttatcaagggtcgg
cctatcagaatcatgtggtctcagcgtgacccaggactcaggaagtccggtgtggggaac
atctttatcaagaacatggacgagtccattgacaacaaggcgctgtatgacaccttctca
gcctttggcaatattttgtcctgcaaggtcgtttgtgacgagaaagggtccaaaggttat
ggatttgttcactttgagacccacgaggctgcaaaccgggccattgacaccatgaatggg
atgctgctgaatgataggaaagtttttgttggacactttaagtcccgtaaggaaagagag
atggagtttggcacgaaagctatgaagttcaccaacgtctacatcaaaaactttggtgaa
gactacacggatgagaaactcaaggaagtctttaatgagtttgggaggactctcagtgtg
cgggtgatgaaggatgagaggggccgttcacgaggatttggctttgtaaactactttaac
cacgaggacgctcagaaggcagttgatgagatgaacgggaaggacctcaatgggaaggtc
atctacgccggtcgggctcagaagcggatggagcgacagggagagctcaagcgcaagttt
gaccagatcaaacaggatcgcatccaacgctaccagggggtgaatctgtacgtgaagaac
ttggacgatggcatagacgacgagagactccggaaggagtttgccccttatggcaccatc
accagcgccaaggtcatgacagacggctcccaaagcaaaggcttcggttttgtctgtttc
tcttcccccgaggaggcaactaaagcagtgactgaaatgaacgggagaatcgttgcgacc
aagcctctgtacgtggctctggctcagcggagggaggagcgtaaagccatcctgaccaac
aaatacatgcagagactcgctaccctgaggaccatgaccagtcccatcatcgactcgtac
cagcagggcggatactacatgacggtgccacagcctcccactcgctccttctacaaccac
aacaccgtcagcaacatgagaccagttcctcgctggacaggacaaccacccagaatgcag
ggcccctactcaacccagtttgttggcaacgctgttccccgacgcggatcgacccccatc
gctacggtcagacaggcctccacccaggctccacgcatcatcagctcctcgcaaaagacg
atcaacataggcacccagactgtgggaggccgtactgacgtgcccggtatgaccagaggc
gctcagtacaagtactcgtctgcagtgagaaacgtccagcaggtcgttactatgcctgca
cccatgactagaatacaggttatgcctgctcctgtgatggagcagccggtgcaccttcaa
ggccacgatcccctcaccacctccatgttggctgcagctccactcatggatcagaaacag
ctactcggggagcggttgtacccagtgatccattcccttcacccaaacttggctggaaaa
atcactggcatgctgctggagatcgacaactcggagctgctgcacatgctggagacgccc
gagtccctgcacgccaaggtggacgaggcgatcgccgtcctgcaggctcaccaggcgaag
gaatgctctcctaagaagtga
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