Anoplopoma fimbria (sablefish): 129100849
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Entry
129100849 CDS
T09102
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129100849 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129100849 (skic3)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
129100849 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_14
TPR_19
TPR_8
TPR_11
TPR_17
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
HAT_Syf1_CNRKL1_N
TPR_15
TPR_Slam
YceG_bac
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
129100849
NCBI-ProteinID:
XP_054466352
LinkDB
All DBs
Position
13:945950..961669
Genome browser
AA seq
1568 aa
AA seq
DB search
MSNKEVKTALKNAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGLAASELEQPDQSQ
TAYKKAVELEPEQLLAWQGLANLYEKTDQWDFKVELPNIYQKLVEMYASSDKNKCYEVIS
KLSDIYQSDKEYSKLAKVWLQLIQVKEEEAVDKKELLQLLQQMTKLISECLNEEERDNET
QQHLITAFEKAMVLMDPVPGEQHKKVSADYVKCLSKQPQDEPKMIKACESMLSLYPDQSY
PLEVLCSHYLKTGVQNEDAVKCFSRLLDLAPNSGLGHLGLGTKALQEGRFKDAIKDLSIG
LKRISSSTGWCSLAEAQFKMQKYSDCAISCSQGLTVCISGDKELRVKLLKLKLEALARSG
GEAAADQALEIFSQIPDAEKEPVLVALKGQAYLNKGQVDEALKVSSELVASHPDLAQGLV
LRGLAQLAQGQQQLAEESFLKAASQSPDCGEYYFLLGRLYWDMGEETRKDRSKAHTHLLK
AAKLDPQLGCVFRYLGHYYRQVANDPGRSRGCYKKAFEMDNDDAESGAASVDLSMEQDDM
DTALAILQSVIEKATPGSAKWAWMRRGLYYLKIGEHQQAVADLQAALRADPDDWVCWECL
GEAYLNRRSFTAALKAFGKAHQLQPSSIYSVYQAAAIKQTLGKFKEAVAEYLQITAQQDY
VPALKGLGECQLSLAKSLMEDCRDGGAIDLIQQAIQNLFRAVEMRPDLSCLWKLLGDACT
AVSTVSPNCAQVLVPAPLAGLDTKSQSHALNQAQTLKVGERCYARALKLMSEVPSLWNDL
GLNYYRQSSLSCFTEDDQNSPSLLLEKAQQCLKKAIMMDSGNRSYWNALGVISMSKGLEN
FALAQHCFIKSIQVEPNNVVAWTNLGTLYLKNDNIELAHKAFKIAQSLEPLYVNCWIGQA
LIAERVGSYDTMDLFRHTTELSTHMEGVKGYAFWVCSTLLDKTNRDSELYRYNIVQMNAI
SAAQVALSKYTERIQSDPDAFIMLGYLNEHLQLKRQALRAYKRAVELLQSLSSTEELAFA
LGSYGRALCTSGQSEEAVRVYNSTPLQELSDLAGLALAYCRAGLIPESINAYERALAVAS
SEKEKAYILTALALLQHQQGNLDSAKTLLFKCSMLKEPISESLLCLCALGLVHSDATLAA
AALTELLKQGPASGNVIEQRCLLTCALLALQGNYSAVQREASRAVHSNPGRPSLWALLSR
LVPQYYPKKANGGAMAGHVACLSSMTQGKRALLHSGVNQLASGRHSREDSHRNALKTMQR
AVLLCPDDPATWAGLMAACHTENTSCYLSGSAPSRLGLEQTLMSVVSEKVHNVEEIERPL
AQALEGWVLKQAITGLMLGGQLEQAEALCSQVLSVSPEHPAVMLSLRQVQCQRLLVAGGG
TVLPDSVLEQLQNTVMMNPTNLGAWHWLAEVFRSQGLLAQAVMAYRQSLQLASQLGLHSS
QVASLLRLALLALGNCMAGAPGKEWTDMILEATTEVLKLGSSPMALLFQALLQYVNKMAA
RETRRLLERLVYAQDFPVTVVQVSSWYLLRHLHAKNDQELMNVLLQHAKTNRDTRLLEFH
SLLASSSS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacaaagaagtgaaaacagcactgaaaaatgccagagaggccataaaaaacaaa
gagttcaaagaagctctgaaacactgcaaggctgttttgaaacttgagaagaacaattat
aatgcatgggtattcatcggcttggcagccagtgagctcgagcaaccagatcagtcacag
acagcctataaaaaagccgtggagctggagcctgagcagctgctggcatggcagggtttg
gcaaatctttatgagaagactgatcagtgggattttaaagttgagctgcccaacatctac
cagaagcttgtggagatgtatgcaagctctgacaaaaataaatgttatgaggtgatcagt
aagctgtcagatatctatcaatctgacaaagaatattcaaagttggcaaaggtttggctg
cagctcattcaggtgaaggaggaagaggctgtggacaagaaagagttactgcagctattg
caacagatgaccaaactcatctcagagtgccttaatgaggaagagcgggacaatgaaact
caacagcatttaatcacagcatttgagaaagccatggttctcatggatcctgtaccagga
gagcagcacaagaaggtctcagctgattatgtcaaatgtctttctaaacagccacaagat
gaacccaaaatgataaaggcttgtgagtccatgctgtccctctaccccgatcaaagttac
cctcttgaagtcctttgttctcactacctcaaaacaggtgttcagaatgaggatgcagtc
aaatgtttctcccggctccttgatctggcccctaacagcggattaggtcacttgggtctg
ggcaccaaagcactgcaagaagggaggttcaaagacgccattaaggacctttccattggt
ttgaagagaataagctccagtacaggatggtgcagtctggctgaagctcagtttaaaatg
cagaaatactcagactgtgctatttcatgctcccaaggtctgacggtatgtatttccgga
gacaaggagctgagggtcaaactgctgaagctgaagctagaggctctagccaggagtgga
ggagaagctgctgcagaccaggctttggagatattctcacagatcccagatgctgaaaaa
gagccagttctagtagcccttaaaggacaagcataccttaacaagggacaagttgatgaa
gcacttaaggtgtcatcagagctggtggcctctcaccctgatctagcccaagggttggta
ctgagaggattggcacaattggctcagggccagcagcagctggcagaggagagtttccta
aaggcggctagccagagcccagactgtggagagtattatttcttgctgggaagactctac
tgggacatgggagaagagacccgaaaagacagaagcaaagcccatacacatttgctcaag
gccgcaaagttagacccacaacttggttgtgtattccgctaccttggacattactaccgc
caggtggcaaatgatcctggccgctcacgaggctgctacaagaaggcctttgagatggac
aacgatgatgctgagtccggagctgcctcagtagatctcagtatggagcaggacgacatg
gacactgctttagcaatacttcagtcagtgattgagaaagccactccgggctcagctaaa
tgggcttggatgaggcggggtctgtactacctaaagatcggagagcatcaacaagctgta
gctgatctgcaggcagctctgagagcagatccagatgactgggtgtgttgggagtgttta
ggggaggcctacttaaaccgtcggagcttcacagctgctctgaaggccttcggtaaggcc
catcagcttcaaccctcctccatctacagtgtctaccaggctgctgctatcaaacagacc
ctgggcaagttcaaagaggctgttgcagagtacttgcagatcactgcgcagcaggactat
gtgcctgctcttaaaggtcttggggagtgccagctgtctctggcaaaaagtttaatggaa
gactgcagagatgggggagccattgaccttattcagcaggccatacagaacctcttcaga
gctgtggaaatgcgtccagacctgtcctgcttgtggaagctgctgggagatgcttgcacc
gcagtcagcaccgtgtcgccaaactgtgctcaagttttagttccagccccactagctggt
ttagacaccaaatcccagagccatgcactgaaccaggcgcagacactgaaagttggtgag
aggtgttatgcccgtgctttgaagctgatgtctgaggttcccagcctttggaatgaccta
ggactcaactattaccgtcagtccagcctatcatgcttcacagaggatgaccagaactct
ccatcgctgctcctggagaaggcccagcagtgtttaaaaaaagctatcatgatggacagt
gggaaccgtagctactggaatgccctgggagtgatttccatgagcaaaggtcttgagaac
tttgctctggctcaacattgcttcatcaagtccatacaagttgaaccaaataatgttgtt
gcttggaccaaccttggtaccctgtatttgaagaacgacaatatagagcttgcacacaag
gccttcaagattgcccagtcgctggagccgctctatgtcaactgctggattggacaggcg
ctgatagcagagagagtgggaagctatgacaccatggatcttttcaggcacaccactgag
ctcagcacacatatggagggagtgaaaggttatgccttctgggtatgttccaccctgctg
gataagaccaacagagactctgaactgtaccgctacaatatagtccagatgaacgccatc
tctgcagctcaggttgcactcagcaagtacacagagagaatccagtccgaccctgacgcc
ttcattatgctcggttacctaaatgagcatctgcagctgaagaggcaggccttaagggct
tacaaaagagctgttgaactgcttcagtccttgtcctcgaccgaagagctggcctttgct
ctgggcagctatggacgtgctttgtgcacctcaggtcagtcagaggaagcagtgcgtgtt
tataattccactccactgcaggagctcagcgatctggctgggttggctctggcctactgc
agggcaggactcatcccagagagcatcaacgcctatgaacgtgccttggctgtggcttcc
agtgagaaggagaaggcttacatcttgacagctctggctctgcttcagcaccagcagggt
aacttggactcagccaagactctgctgtttaaatgctccatgttaaaggagccaatctcg
gagtctctgctgtgtttatgtgccttggggttagtccacagtgatgccacactagctgct
gctgccctgactgagttgctaaagcaaggtccagcctctgggaatgttatagagcagcgg
tgtctcctcacctgcgccttgctcgccctgcagggcaactacagcgcggtgcaaagggag
gcttccagagctgttcacagcaatcctggaagaccatctttatgggccctgctgtccagg
ctggtaccacaatactaccccaagaaggctaatggtggagcgatggctggtcatgttgca
tgtctctccagtatgacccaaggaaagagggcgttgttgcacagtggagtgaaccagctg
gctagtgggagacactccagagaggacagtcacaggaatgcactgaagactatgcagaga
gctgtgctgctctgtcctgatgatccagcaacatgggcaggattaatggctgcctgtcac
acagaaaatacttcctgttatctctcaggttctgctcctagcagactaggactggagcaa
acgctcatgtcagtggtttctgagaaagtgcataatgtggaggagatagagcgcccccta
gcccaggctctagaaggctgggtactaaaacaggcaattactggtctcatgttgggggga
cagctggagcaggctgaagccctctgctcacaggtgctgagtgtttctccagaacaccct
gcagtgatgctgtcactgagacaggtacagtgtcagcgcctcctagtggccggtggtggt
actgtgctcccagactctgtgctggagcaactccaaaacacagtgatgatgaaccccaca
aaccttggggcgtggcattggctggctgaggtgtttcgcagccagggcctgctggctcag
gcagtcatggcttacaggcagagtctgcagctagcctcacagctcggcctgcacagcagc
caggtagccagcctgctacgactagcgctgctagccctaggaaactgtatggcgggtgcc
ccaggaaaggaatggacggacatgatactagaggccaccactgaagtcttgaagctgggt
tcatctcctatggccctcctcttccaggccctgctccagtacgtgaacaagatggctgcc
agggaaacaaggcgtttgttggagaggctggtttacgctcaagacttcccagtgacagtg
gtgcaagtgtccagctggtacctcctcagacacctgcatgccaagaacgaccaggaactc
atgaatgtccttttgcagcatgccaaaacgaatagagatacaagactgttggagtttcat
tccctacttgcttcttcttcatcctga
DBGET
integrated database retrieval system
