Anoplopoma fimbria (sablefish): 129101004
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Entry
129101004 CDS
T09102
Symbol
top3b
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 3-beta-1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03440
Homologous recombination
afb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129101004 (top3b)
03460 Fanconi anemia pathway
129101004 (top3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afb03032
]
129101004 (top3b)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129101004 (top3b)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
129101004 (top3b)
DNA replication proteins [BR:
afb03032
]
Eukaryotic type
DNA Topoisomerases
129101004 (top3b)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
129101004 (top3b)
FA (Fanconi anemia) pathway
129101004 (top3b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Motif
Other DBs
NCBI-GeneID:
129101004
NCBI-ProteinID:
XP_054466557
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All DBs
Position
13:14802061..14830347
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AA seq
858 aa
AA seq
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MRTVLMVAEKPSLAQSIAKILSKGNCTSRKGLNGACSVHEYPGNFQGQAVRFKMTSVCGH
VMSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEARGCDYVVLWLDCDK
EGENICFEVLDTIQPVMNQGSVRDQTVYRAKFSSITDTDIWNAMNCLGKPNQNEAMSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
WVIQAKVFRGKDTPLTLDWNRVRVFDRDVGQMFVNLAKTSREATVESVSKKEKAKQRPQA
LNTVEMLRVASSSLGIGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLKGTLKQQANN
PMWAEEVKALLATGLNRPRKGADAGDHPPITPMRAASEAELGSDGWRLYDYITRHFIATV
SQDCKYLQTTIDFSIGPEAFSCSGKTLLSPGYTAVMPWQGIPLEEAMPVCERGDTFTVDE
IKLVEKQTXPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVENGRKLKPTNL
GIVLVHGYYKTDAELVLPTIRSAVEKQLTLISLGKANYQQVLQHTLDIFKRKFHYFVDSI
PSMDELMEVSFSPIAASGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKL
YKELRCPLDEFELVLWTSGARGKSYPLCPYCFSNPPFRDMKKGMGCNECTHPSCQHSLNS
LGIGQCVECDGGVLVLDPTSGPKWKMACNKCNVVVHFFEHAHRVQVAQESCDACDASLVA
VDFNKTRTPLPVGETQHTGCVFCDPVFQDLVELKHATMRHAMYRGGGARRGGRGRGRGRR
GNTKKPKDKMAALAAYFV
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgagaactgttttgatggtggcagagaaaccatccttggcgcagtcgatagccaaaatc
ctatctaaaggaaattgtacaagtcgcaaggggctcaatggagcatgctcagtgcacgaa
taccccggcaatttccaaggccaagctgtacgctttaagatgacttctgtttgtggacat
gtgatgagtctggatttcatcgggaagtacaacaactgggacaaggtggaccctgcagaa
ctctttagcaaggctcccacagaaaaaaaggaggccaaccccaaactcaacatggtcaag
ttcctccaggttgaagccagaggctgtgactacgtggttttatggttggactgtgataaa
gaaggcgagaacatctgctttgaggtactggatactatccagccggtgatgaaccagggg
agtgtcagggatcaaaccgtttaccgcgccaaattcagctccatcactgacaccgacatc
tggaatgccatgaactgcctgggaaagcccaaccagaatgaagccatgtccgtggatgca
cgtcaggagctggatctgcgcatcggctgtgccttcacccggttccagaccaagtatttc
cagggtaagtatggcaatctagactcctccttgatctcatttggaccatgccagacccca
acactaggcttctgtgtggaacgccatgacaagatccagtcctttaaaccagagacttac
tgggtcatccaggcaaaggtattcagaggaaaagacaccccactgacactggactggaac
agggtgagggtctttgacagggacgttggtcagatgtttgttaatctggccaagacatcc
agggaggcaacggtggagtcagtgagtaagaaagagaaggctaagcagaggccccaggcc
ttgaacactgtggagatgttgagagtggccagctcctccttaggcattggtccccagcat
accatgcagattgcagagcgcctgtatactcagggctacatcagctacccacgtactgaa
acaacccattacccagagaacttcgacctgaagggaacactgaagcagcaggccaacaat
cccatgtgggcagaagaggtgaaggctctgcttgcaacgggattaaaccgacccaggaaa
ggagctgatgctggagaccatccacctatcactcccatgcgtgctgcctcagaagcggaa
ctgggaagtgatggctggcggctttatgactacatcacacgacatttcattgccactgtc
agtcaggactgcaagtacctacagaccaccattgacttcagcattggcccagaggccttc
tcgtgtagtggcaagacccttctatcaccaggatacactgcagtgatgccatggcagggc
attcctctggaagaggccatgcctgtttgtgagcgtggagacactttcacagtagacgag
atcaagctggtggaaaagcaaaccnagcccccagactacctgacagaggctgaactcatc
accctcatggagaaacatggcattggtactgatgccagcattcctgtccacatcaacaac
atctgccagaggaactatgtgaccgttgagaatggacgcaagttaaagccaaccaacctg
ggcattgtcctggtacatggttactacaagacagatgcagagctggtgctgcccaccata
cgtagcgctgtggagaagcagctgacccttatctctttgggtaaggctaactaccagcag
gtcctgcagcacacgctggatatcttcaagaggaagtttcactactttgtggactccatc
cccagcatggatgagttgatggaggtctccttttcccccattgctgcttctgggaagccc
ctgtcccgctgtggcaagtgccaccgcttcatgaagtacatccaggcaaagcccagcagg
ctccactgctcccactgtgacgagacctacagtcttccccagaatggagccatcaagctg
tacaaggagctccgctgtccgctggatgaatttgagcttgtgctatggacctctggagcc
cggggcaaaagctaccccctgtgcccatactgcttcagcaacccacctttcagagacatg
aagaaaggtatggggtgcaatgaatgtacccatccttcctgtcagcactctctcaactct
ttgggcattggacagtgtgtggagtgtgatggtggggttttggtgctggatcccacttct
ggaccaaaatggaagatggcatgtaataaatgcaacgtggtggtgcacttctttgaacat
gcacacagagtgcaggttgctcaggagagctgcgatgcctgcgacgcctctctggttgcg
gtggacttcaacaagactcgcactccgcttcctgtcggtgagacccaacacactggctgt
gttttctgtgatccagtcttccaggatctggtggagctcaaacatgccaccatgaggcac
gccatgtaccggggtgggggtgcgagacgaggaggacggggacgtggcagaggacgccgt
ggcaatactaaaaaacctaaagacaaaatggccgccctggcagcttactttgtatag
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