Anoplopoma fimbria (sablefish): 129101007
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Entry
129101007 CDS
T09102
Symbol
neo1a
Name
(RefSeq) LOW QUALITY PROTEIN: neogenin 1a
KO
K06766
neogenin
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04350
TGF-beta signaling pathway
afb04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
129101007 (neo1a)
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
129101007 (neo1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
afb04515
]
129101007 (neo1a)
Cell adhesion molecules [BR:
afb04515
]
Immunoglobulin superfamily
DCC/UNC5 family
129101007 (neo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
ig
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Fn3_VIN3
V-set
Interfer-bind
Ig_RIMBP2
NDNF
fn3_2
fn3_SORL1
Tissue_fac
C2-set_2
Fn3_Dep-1_3rd
Sp38
V-set_CD47
EphA2_TM
TM_ErbB1
Ig_PDGFR_d4
Motif
Other DBs
NCBI-GeneID:
129101007
NCBI-ProteinID:
XP_054466563
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All DBs
Position
2:complement(7242832..7405350)
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AA seq
1478 aa
AA seq
DB search
MAERGALSLLSLLCLTSLHTDSTAAKHVDKGSAAQPFNPFWFTAEPQDTLAVRGNSALLN
CSAHSDAATPARIEWKKDGTFMSLVSDERRNILPDGSLFFAHVVHSKHNKPDEGTYQCVA
TIDNIGSISSQTARLSVAGMPRFASQPSAATVHLGNNQVMACEVNSDLVPFTRWEKDRLP
LELSARLVQLPSGALVISNATEADAGLYRCLVENVGSSKSSDEATLQILPETGEERKPEF
LVQAAAATKSVGASVLLPCVATGFPAPHVRWMFGDKLLEESEGRVEMLGGGSIQISNLTE
EDGGVYTCTADNGNATIEAEVQLTIEVPPQFVKRPDNIYAYESMDIVFECEVSGSPAPTV
KWVKNGDAVIPSDYFKIIKEHNLQVLGLVKSDEGFYQCLAENDAGNIQSSAQLIILDHDV
ALPSFPPPSLTPNTTDHVTPGSGGVVSPAGPAPSXPRDVVASLVSTRFIKLTWRPPAEPH
GDELTYSVFYSQDGTSRERVVNTSRPGEMQVTIQNLMPDTKYRFRVVGHNSNGQGESSAA
LKVATQAEVQVPGPAPNLQAVSNAPTSVSLSWDKPLTGNGEMLTYKLYYTDKSFGTEQDV
DVDSQSYTMNGLKKNTEYNFRVVANNQHGPGVSTDDIVVRTLSDVPSAPPQNLTVEVQNS
KSIMLRWQPPPLNGQNGEITGYKIRYRKGSRRSEAAETTGGTQLLKLIDGLERGTEYSFR
VSAMTVNGTGPATEWTAAETFESDLDESRVPDQPSSLHVRPLVNSIVVSWTPPENQDIVV
RGYTIGYGIGSPHAQTIKVDYKQRYYTIENLDASSHYVITLKAFNNVGEGIPVYESAITR
PQSDAIDPDVDLYELFHAPYTPVPDPSPMMPPVGVQASVLSHDTIKVTWADNSLPKNQKI
TDIRFYTVRWKTNIPANTKVKMANTTSLNHMVTGLKPNTLYEFSVMVTKGRRSSTWSMTA
QGTTFETIPSSSPKDVTVVSKENKPRTIIVNWQPPSEANGKITGYIIYYSTDVNAEVHDW
VIEPVVGNRLTHQIQELTLDTTYYFKIQARNSKGMGPMSEAVHFRTPKTSNLPPKPGPSG
NQNPQDPGNPVGKSGVGGNSEGHILVIVIIISVGAFTIIVVVVGAFLCTRRTTSHQKKKR
AASKSSNGSHKYKGNSKDLKPPDLWIHHERLELKPMDKSPDPNPVMTETPIPRSSQDITP
ADSGLDNNPHLQQRRNSYRGHESEDSMSSLAGRRGMRPKMMMPFDSQPPQPVISAHPIHS
LDNHHHHYHMGSLASPTRSYLYHQGGGHPRPHACATPISHLERVDSTESVRNTPSSEPLP
PAAASSSQASCPSEIMVDTEGSYHGSTTTEEEPSYSSNLPPHRPAHPHAHAHPLKSFGVQ
SISSTGHPSFESPALPSTPLLAQTGPPSHPHVVKTACIGTLGRTRTPMVVTVPNAPDVPE
TSKMLEDVDSSYEPDELTEEMAHLEGLMKDLNAITTAP
NT seq
4437 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcggggagctctgtcgctcctctccctcctctgcctcacctctctccacacg
gactccaccgccgccaagcatgtcgacaaaggttcagcagcgcagcccttcaaccccttc
tggttcacggcggagccccaggacacgctggccgttcgggggaactcggcactgctcaac
tgctcggcccacagcgacgcggcgacgccggcacgcatagagtggaagaaagacggcacc
ttcatgagcctggtttcggacgagaggcggaacatacttcccgatggctcgctgtttttc
gcccacgtggtccactccaagcacaacaagcccgacgagggaacctatcagtgtgtggcc
accatcgacaacatcggatccatctccagccagacggcccgtctctccgtagcaggcatg
ccaaggttcgccagccagccgtcggcggccaccgtgcatctagggaacaaccaggtgatg
gcgtgtgaggtcaactcagatctggtgcccttcaccaggtgggagaaggaccgcctgcct
ctggagctgagcgccaggctggtccagctgcccagcggagccctggtgatcagcaacgcc
acggaggcagacgccggcctctaccgctgtctggtggaaaatgtggggtcgtccaagtcc
agcgacgaggccacgctccagatactgccagaaaccggagaagagaggaagccggagttc
ctggtgcaggccgcggcggcgaccaagtcggtgggcgccagcgtgctgctgccctgcgtg
gccactggtttccctgcgccgcacgttcgttggatgtttggagacaagctgctggaagaa
agcgagggtcgtgtggagatgctgggaggaggaagtatccagatctccaacctcacagag
gaggacggcggcgtctacacctgcacggcggacaacggcaacgcaaccatcgaagccgag
gtccaactcaccatagaagttcctccccagtttgtcaagcggccggacaacatttatgcc
tatgagtccatggacatcgtctttgagtgtgaggtgtcggggtcaccggctcccactgtc
aaatgggtcaagaacggagacgctgtcatccccagtgactacttcaaaataattaaggag
cacaacctgcaggttctgggtctggtcaagtccgatgagggtttctatcagtgccttgcg
gaaaacgatgcgggcaacatccagtccagcgcccagctcatcatcctcgatcacgatgta
gccctgccctctttccctcccccctcactgactcctaacactactgaccatgtaacgcca
ggctccggaggtgtggtcagtccagcggggcccgccccctctngcccccgggacgtcgtg
gcttctctggtttccacccgcttcatcaagctcacctggcgcccgccagcagaaccccac
ggagacgagttaacctactccgttttctacagccaggacggaactagcagggagcgagtg
gtgaataccagccgtccaggggagatgcaggtcaccatccagaacctcatgccagacacc
aaatatcgcttcagggttgtggggcacaacagcaacggccagggagagagctctgcagcg
ctcaaagtggccacccaggctgaagtgcaagtgcccggccctgctcctaacctgcaggcg
gtatccaacgcgccaacctccgtctctctgagctgggacaaaccgctcactggcaacgga
gagatgctcacctacaagttgtactacaccgacaaaagctttggcaccgaacaggacgtc
gacgtcgatagtcagtcgtacaccatgaatgggctgaagaagaacacagagtacaatttc
cgtgttgtggccaacaaccagcacggtccaggcgtctccacggacgacattgttgttcgc
acgttgtctgacgtaccaagtgctcctcctcaaaacctcaccgtggaggtccagaactca
aagagcatcatgctccggtggcagcccccgccccttaacggccagaatggggagatcacc
ggctacaagatccgataccggaaaggatctcgacggagtgaagcagccgagaccaccgga
gggacccagcttttgaagctcattgacggtctggagcgtgggacagagtactccttccgg
gtgtcggccatgacggtgaacggcacgggaccggccaccgagtggaccgcggcagagacg
tttgagagcgacctggatgaatctcgtgtaccggaccagcccagctccctccatgtgcgg
ccgctggtcaacagcatcgtggtgagctggacgccgccagagaaccaggacatcgtggtg
cgcggttacaccatcggctacggcatcggcagtccccatgctcagaccatcaaagtggac
tacaagcagcgctactacaccatcgagaacctcgatgccagctcccactatgtgatcacc
ctgaaggccttcaataacgtgggtgaggggatccccgtgtatgagagcgccatcaccaga
ccacagtccgacgccatagatcccgatgttgacctgtacgaactcttccatgctccatac
accccagtaccagatccctcccccatgatgccacccgtgggcgttcaggcctccgtgctg
agccacgacaccatcaaggtgacctgggccgacaactcgctgcccaagaaccaaaagatc
acagatatccgattctacacagtccgctggaagaccaacatccccgccaacactaaagtg
aagatggccaacaccaccagcctgaaccacatggtgaccggtctgaagcccaacacactc
tacgagttctccgtcatggtgaccaaagggcgccgctccagcacctggagcatgaccgca
cagggcaccaccttcgagaccattcccagctcctccccgaaagacgtgaccgtggtgagc
aaagagaacaaacctcgcaccatcatagtcaactggcagcctccctctgaggccaatgga
aagatcactggctacatcatctactacagtacagatgtaaacgctgaggtccacgactgg
gttattgaaccagtggtggggaaccgcctgacccaccagatccaggagctgacgctggac
accacctactacttcaagatccaggcccgaaactcaaagggcatgggccccatgtctgag
gccgttcatttccgcactccaaagacctcaaatcttccaccgaaaccggggccttcaggc
aaccaaaatccacaggacccaggaaatccagttggtaaatcaggggtcggaggaaacagc
gaaggtcacatcctggtcattgtcatcatcatctcggtgggagccttcaccatcatcgtg
gtggtggttggggcctttctgtgcacgcggcgcaccacgtcccaccagaaaaaaaagcga
gctgcctccaagtcctcaaacggctcccacaaatacaaggggaactccaaagacctgaag
ccacctgatctttggatccaccacgagaggctggaactgaaacccatggacaagtcgcca
gaccccaacccggtcatgaccgaaacgcccatcccccgctcctcgcaggacatcacgccg
gctgatagcggcctggataacaacccccacctgcagcagcggcgcaactcctaccgtggc
cacgagtcagaggacagcatgtcttcactagcaggccgacgagggatgaggcctaaaatg
atgatgccttttgactcacagccacctcagcctgtgattagtgctcaccccatccattcc
cttgataaccatcaccaccattatcacatgggcagcctggcgtcgccgacacgcagctac
ctctaccaccagggcggcgggcacccacgcccgcacgcctgcgccacccccatctcccac
ctagagagggtggactccacagaatctgtgaggaatacccccagttcggaaccccttcct
ccagccgccgcctcctcctcccaggcctcctgcccctcggagatcatggtcgacaccgag
ggcagctaccacggctccaccaccaccgaggaggagcccagctactccagcaacctgccc
ccccaccgcccggcccacccgcacgcccacgcacaccctctcaagagcttcggcgtgcag
tccatctcgtcgaccggccatccgtcgtttgagtcgcctgccctgcccagcacgccgctg
ctcgctcagaccgggcctccttctcacccccatgttgttaaaacagcctgtatcggaaca
ctaggaaggacacgaacaccgatggtcgtcaccgtgccgaacgcccccgacgtgccggag
acgagcaagatgctggaggacgtggacagcagctacgagcccgacgagctgaccgaggag
atggcccacctcgagggcctcatgaaggacctgaacgccatcaccacagcgccatga
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integrated database retrieval system
