Anoplopoma fimbria (sablefish): 129101047
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Entry
129101047 CDS
T09102
Symbol
vps13a
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129101047 (vps13a)
Membrane trafficking [BR:
afb04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
129101047 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
CSD
Motif
Other DBs
NCBI-GeneID:
129101047
NCBI-ProteinID:
XP_054466621
LinkDB
All DBs
Position
13:5104871..5141263
Genome browser
AA seq
3250 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGQLELKIPWKNLYNQSVEATLDGVYLLIVPTASIKYDAVKEEKQLQEARQRELQRIEE
TKMKAAEKEDPQLEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDDVTNPNCPLSFGVSLK
NLSLQTCDENWSPRLLDENSRLFFKLVQLDNLFAYWNVKSLLFSNHSPDEALRCLQSSVD
IHNSMSVSHDFIFRPISAGAKLRMNPRSDVDFSSPKVDLMVNLSEVAIELNRPQYISILE
LLGSVDMMSRNLPYRKYRPMVHVHENAHIWWKYVITGILEVDVKPNLHMWSWQCMRSHRR
RVKCYRELYKTKITSKKPSEELLKELEEPEKTLDIFNITLARQQAEVEASKAGLRIYRPG
LKMEEEESQGWLSWMWSWGGEADTETKEVKTGGFDELLTTAEKAKLYTAIGYSETAANPN
LPKNFEDMKVNFHMEKLSVSIKDNKDKNEIIRLTVGELKSTLTQRPGAQAIKVTAQLSLF
EVTGLSSNRPAPTLLSSRKAATGAGTPLLCILFETNPLDESANQRLHVESQPLEIIYDAI
TVNSMSAFFMPPDDLQLDELTNATLMKLEQFRDRTATGLMYVIETQKVLDLKVNLMASYV
IIPQTGFYNGTQNILLLDLGHFKMSSQSKKHLPQLSVCSSNIEDIMLRAYDSFDIQLSSL
QFLYSKPDGDWKMARKQKQSPLHILEPVDLKVVFSRAMVIKDSRMAKYKMSGELPLLSLR
ISDVKLRNVLQLVESIPLPESRPAAHTTAASSAPKPKQSFTPQLTPRRPLNLADQRSSLM
FESCETISITSLGSEEDLFYDAPSSPVGDRTFFPDNPMPLSYANKRKGSETKKNMTEFFM
TFEISEFSVQLCRLSEDQEVTVLHLDIEGLGTELTLRTFDMTSNTYLREICLKCPEYMDS
EEKQVQLITTLDNTEDDLLTLDYIKADKNGPEFKSQHNNTEQLIKVTFSSLDVHLHTEAL
LNTMNFLSNLLPPSTKKEGGQDDLPTIPEEEXAEAEREGEKKEEVTVTRKKSTKSSKFAN
VVNLHIRADLRCLKVFIRGQKARISEISIEGLVSEVLMRKKEMEVLANLKNIVILDCDKD
ALYKKAVSIADEEVFAFRMVNYTDATEGDAYLDMSKVDTSVTLTVGCIQVIFLNKFVSSI
LAFINNFQEAKEALAEVTVQAAEKAASGVKELAERSTRIALDVHFNAPVIFLPQSSSSSN
VIVADLGLLSVKNCFAKQPFKSDAKIPPVVDIMIVRLTDLKMYRTTYVDEGFQGETQLLM
PVSLDLEIQRNLSSNWYHTIPDIEITAHLKPMSLILSQDDMTVILRTLSENLSEKSDALP
PPAPPSTTDRSSDSVSNKESQGSGTTGPASSNTVVTAAVVEPHKSSKLKSTLKLDFKFDS
MTLVLYSPNGNEIQLLDSHDEQLKLAEFTLGTISTSVHMFSDSSMKASVRLAACLLDDKR
PSIKMVTPRMIAMRPGAEQNMMVEVNYRQGRDGTTLDTVVQDVYLCASMEFLLTVADIFL
KATQQGFAQKPQPKSSTAVGEKKNINSSTTSKESTVAPAVVSKTEMNVLVRNPEIVFVAD
LTRADAPALVMTTQCELLMKSGAEGSQMTAVIKELKVVACPFLREKRKKNVTTVLQPCQV
FFQSNQSPTSPQAMEVSINALTLKVSPIIINTVMTIQSALTPTAETPEKLDSPVPVDLWE
KRGWKELKLWFLEEEGDEDTESRSPLIPQGESLKVSIKSVCLTLEAGVGHRTIPMLLAKS
SFHGDVKNWSTLINLHSELNLEVHYYNEMMGVWEPLLEPLEDDTRDVFRSWRLELKMKKK
QVNYTYSDEVDFNVPDYKTVIVISSVDQLNITLSKCGLAMLSNLGMAFAEAAKQTADSFQ
KDEAPFVVKNRLGLQVSFRHSEMFCPIGQQSTNSTVKLQDGETIGMDYSAKADADQFSAM
ISLSGKDYSIEPTPMGHTSAGVIPLIKVGGGMYNVMHKDSGVTRFLVCQIYSVEGSKYIK
IRSPFQIINHFSIPFKVLEGSTCLGTALPTEEFCVPLDSYRSELSLQPITDEDADDQGEQ
FECSEGFSYEEFSNKLPETRLQQTCRRRGDQGGVLMVNMVPLRDTVTFKHTGCVGDNFDV
PFVLHLWPSVLLRNLLPYPISYKLKDSGVSTPEATLNPGHSAQLHTAVIDQSSLDLRLLN
YLAQDWSSEYSFHSDKEEITFIVFESLRENDEDDGEGMEMKRAELDIAVHVKYDLGQTVV
AIHSPYWMVNKTGRLLQYKADDIHRKHALEYDMPLLFSFKPRYFLKNNKVRLMISDSELS
DDFSLDTVGSYGDVKCKGRYKDYLVGVKIDASSFSLTRIVTFVPFYMLVNRTKHSVFICE
VGQDNWTEAQPEQSAIPFWPENDTKQLKIKVEGCLLPPRTIDFTRPENCLLLHLDNSVGG
ITVDVNLSEHSATIRFSEYHDGAAPFLIINHTKEQTLQFHQSSQKEAEQEELEAGKAVHY
TWTEPTGSRELCWKCGTYSGKLKTEEDLRQDMNNEAKLFVISFYEGLQRVVLFTEEKHIY
KMLCENEKVQLAEQEIILSLQSVGVSLVNNSSGQEVSFIGITSSDVVWELKPKKKNRWKT
LSSREAEMLESSFKEYTESGPQDPVIHDLENNFQVFFTPNGIDMKMFQPCDAPLRRHFLP
GLKVEYSVSPRQSAYRVQIHRIQIQNQLPGAIFPYVFYPVKLPKSITMDAEPKPLTDISI
VTRTAGHSDISRIKYFKVLIQEMDLKLDLGFLYAILDLFTPENASIMSSEQEVELFEKDI
EYIKTELNHASAADNSPISLYEYFHISPIKLHLSFSLSTGGEDGLKEKRDKELIPIQSLN
LLLKSIGATLTDVQDVVFKLAFFELTFQFCTTQQLQWEVIRHYSKQAIKQMYVLVLGLDV
LGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVKALVGGAVGGIAGAASRIT
GAMAKGVAAITMDEEYQQKRRETMNKQPSGLREGLARGGKGLVSGFVSGITGIVTKPIKG
AQKEGAAGFFKGIGKGLVGAVARPTGGIIDMASSTFQGIKRAAETSQDIASLRPPRFIHE
DGVIRPYKESEGIGSQMLQKIENGRFAKYRYFAHAKVNDSDFLMITKRGIFFVTKGTFGQ
LTCEWQYLFEEFTKDPQIVENRRLRIEAKERVKSVFHAKEFGKIINFRNAELAKWVLARL
DDARESLPKF
NT seq
9753 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgagagcgtggtggttgatgtcctcaaccgttttttaggggactacgttgtc
aaccttgacagctcccagctaaagctcggcatatggggaggtgatgcagttcttagaaat
cttgagataaaagaaaatgccttgagtcaactcgacattccttttaaagtgagagccggt
catataggacagctggagctaaagataccatggaagaacctctacaaccagtcagtagag
gcgacactggatggcgtctatctgctcatagtcccaacagcaagtataaagtacgatgca
gtaaaggaggaaaagcagctacaggaggctcgtcagagggagctacagcggatagaggag
acaaagatgaaggctgcggagaaagaggacccccagctggaaaagcaggacacctttgtg
gagaagcttgtcactcaggtcatcaaaaacctgcaggtcaagatctctaacatccacata
cgctatgaagatgatgtcactaatccaaactgtcccttgtcatttggagtgtcacttaaa
aacctcagtcttcagacgtgtgatgagaactggagtcccagacttttggatgagaattcc
aggcttttcttcaagttggttcaactagacaacttgtttgcctactggaatgtcaagtct
ttactcttctccaatcacagtccagatgaggccttgcgatgtctccagagcagcgtggac
atccacaactccatgtctgtctcccatgacttcatttttcgtcctatctcagcgggcgct
aaactgcggatgaatcccaggtcagatgtggacttctcctctcccaaagtggacctaatg
gtcaatctcagtgaggtggccattgagctcaacagacctcagtacattagcatcctggag
ctgctgggctcagttgatatgatgtctcggaatctgccgtacaggaagtacagaccgatg
gtccacgttcacgagaatgcccacatttggtggaagtacgtgatcacaggcatcctggag
gtggatgtgaagcctaatctccacatgtggtcatggcagtgcatgcgcagtcaccgacgg
agggtaaaatgttaccgagagctctacaagaccaaaatcaccagcaagaaacccagtgag
gagctgctcaaggaactagaggagcccgagaagaccttggatatttttaacatcacgttg
gccagacagcaggctgaggtggaggcaagcaaggcaggcctacgcatttaccgtccaggg
cttaagatggaggaagaggagtctcagggttggttgagctggatgtggagttggggagga
gaggctgatacagaaacaaaagaggtcaagaccggaggttttgatgagctgttaaccacc
gctgaaaaagccaagctctacacggccattggatacagtgagaccgctgctaatcccaac
ctgccaaagaattttgaggacatgaaggtcaatttccacatggagaagctgtctgtgtcc
atcaaagacaacaaagacaaaaatgagatcatcaggctgactgtgggagagctgaagtcc
acactcacacagagacctggagcacaagccatcaaagtcacagctcagcttagtctgttt
gaagtcaccggcctgtccagtaaccggcccgcaccaaccctcctgtcatcaaggaaggca
gccacgggagcagggaccccgctgctctgcatcctgtttgagaccaacccgctggatgag
agtgctaaccaacggcttcatgtggaatcacaacccttggaaattatctatgatgctata
acagtgaacagcatgtcagcgttcttcatgcctcctgacgacctgcagctggatgagctc
accaacgcaaccctcatgaaactggagcagttcagagaccgcacagccaccggtttaatg
tatgtgatcgaaacacagaaagtcctggacctgaaggtgaacctgatggcctcctatgtc
atcattccacagactggcttttacaatggcactcagaacatcctactgttggaccttgga
catttcaagatgtccagtcaaagcaaaaagcatctgcctcagctgtccgtgtgctccagt
aacattgaggatatcatgttaagagcatacgacagctttgacatacagcttagcagcctg
cagttcctttatagcaaaccagatggtgactggaaaatggcccgtaagcagaaacagtca
ccgctccacattctcgagccagtagatctgaaagtggttttcagcagggcgatggtcatc
aaagactcacgcatggcaaagtataagatgtccggagagctccccctgctgtctctccgt
atttctgatgttaaactgcgaaatgttctgcagctggtagaaagtatcccactgcctgag
agcagacctgctgcacacaccactgctgcatcctccgctccaaagccaaagcagtcgttc
accccacagctcactccaagaagacctctcaacttagctgaccagcgctcctctctcatg
tttgagtcatgtgagaccatcagcatcacctcattggggtcagaggaagatttgttctac
gatgctcccagctctcccgttggtgatcggacattcttcccagataatcccatgccgctg
agctacgcaaacaaaagaaaaggttcagaaactaagaagaacatgacagaattcttcatg
acgtttgaaatcagtgagttttctgttcagttgtgtcgtctgtccgaggatcaggaggtc
acagtgctccacctggacatagagggtctgggcaccgaactgacactacgcacctttgac
atgacatctaacacctacctacgagagatctgcctcaagtgccctgaatacatggattct
gaagagaagcaggttcagctgatcaccactctagacaacacagaagatgaccttcttacc
ctggactatattaaagctgataagaatggccctgagttcaagtctcaacacaacaataca
gagcaacttattaaggtgaccttctcgtccctggatgtccatctccatacagaggccctt
cttaacaccatgaacttcctcagcaacctccttcctccatccactaagaaggagggaggg
caggatgatctccccaccatccctgaggaggagnnggcagaagcagagagggagggagag
aagaaggaggaagtgactgtaaccaggaaaaaaagcacaaagagttcaaagttcgcaaat
gtggtaaatctgcatatcagagctgatctccgctgtctgaaggttttcattcgaggacag
aaagccaggatctcagagattagtatcgaaggtctggtttctgaggttctgatgaggaaa
aaggagatggaggttcttgcgaacctgaagaacatagtaatcctagactgtgacaaagat
gcgctttacaagaaggctgtgtctatcgcagatgaggaagtgtttgctttccgcatggta
aactatacagacgcaacagagggagatgcttatctggacatgtctaaagttgacacctct
gtcacgctgactgtgggatgcatccaggtcatcttcctcaacaagtttgtctcctccatc
ctggcattcatcaataacttccaggaggctaaagaggccctggctgaggtcacagtccag
gctgcagaaaaggcagcgtcaggtgtgaaggagctggcagagcggagcactcggatcgct
ctggacgtccacttcaatgcacccgtcatcttcctgccccagtcctcctcttcctctaat
gtcatcgtagctgaccttggtctgctgtctgtcaagaactgctttgccaagcagcccttt
aaaagcgatgcaaagatcccgcctgttgtggatataatgattgtgagactgactgacctc
aagatgtacaggaccacatatgtagatgaaggttttcagggagagacccagctgttgatg
ccagtcagcctggatttggaaatccaaagaaatctttcatccaactggtaccacactata
cctgacatagagatcactgctcatcttaaacccatgagtctgatcctcagccaggatgac
atgacagtgatcctgaggactcttagtgagaacctgtcagagaagtctgatgctcttcca
cctccagctcctccatccaccactgaccgctcctctgactctgtatctaacaaagagtcc
cagggctctggaacaactgggccggccagcagtaacacagtggtgacggctgctgttgta
gagcctcacaaaagcagcaagctgaagagcacactcaaattagacttcaagtttgactca
atgacactcgtcttgtatagccctaatgggaatgagatacagctgttggattcccacgat
gagcagctgaagttggcggagttcactctgggcaccatctccacctccgtccacatgttc
tccgacagctccatgaaggcctcagtccgactggctgcctgccttctggatgacaagaga
cccagtatcaagatggtcaccccgaggatgattgcaatgcgtcctggtgcagaacagaac
atgatggtggaggtgaactaccgtcagggccgtgatggcaccactttggacacagtggtg
caggatgtgtacctgtgtgccagcatggagttccttctcacagtagcagatatctttctc
aaggccacccagcagggttttgctcaaaagcctcaacccaagagcagtactgcagtggga
gagaaaaagaacattaactcctctaccacatctaaagagtccactgtagctccagctgtg
gtgtcaaagacagagatgaatgttctggtgcgtaacccggagattgtgtttgtggctgac
ttgacgcgtgctgacgccccggccctggtgatgaccacgcagtgtgaactactgatgaaa
agtggtgcagagggatcacagatgactgctgttatcaaggaactcaaggtagtggcctgt
cctttcttgagagagaagaggaaaaagaatgtgaccacagtgctgcagccgtgtcaggtg
ttctttcagagtaatcagtccccaacctcccctcaggctatggaggtctccatcaatgcc
ctcacattgaaggtatctccaataatcatcaacacagtgatgaccatccagtctgcactg
actcccacagcggagacccctgagaagctggatagtcctgttcctgtagacctgtgggag
aaacggggctggaaggagctcaaactttggttcctagaagaggagggggatgaagacaca
gagtcacggtccccactgataccacagggagagtcattaaaggtgtccatcaaatctgtc
tgtctgactctggaggctggagtgggacaccgcactatccccatgcttctggccaagtcc
tccttccatggagatgtcaaaaactggtccacactcattaacttacacagtgagcttaac
ctggaggttcactattacaatgagatgatgggagtgtgggaaccgctgctggagccctta
gaagatgacacaagagatgtttttagatcatggagacttgaactgaagatgaagaaaaag
caagtgaattacacatattcggatgaagtggatttcaatgtcccggactataagacggtc
atcgtcatcagcagtgtagaccagctcaacatcaccctctccaagtgtggcctggccatg
cttagtaacttgggcatggcatttgcagaggctgccaaacagacagcggactctttccag
aaggatgaagctccgttcgtagtgaaaaaccgccttggcctgcaagtgtccttccgccac
agtgagatgttttgtcccatcggccagcagagcactaacagcactgtgaagctgcaggat
ggagaaaccatcggtatggactattccgccaaagcagacgccgaccagttttcagccatg
atctccttgagtggaaaagactactccatagagcctactccgatgggccacacctcagcc
ggtgtaatccccctgatcaaggtcggcgggggaatgtacaatgtaatgcacaaagactca
ggagtgactcgtttcctggtctgtcagatttactctgtggagggaagcaagtacatcaag
atccgctctcctttccagatcatcaatcatttctcaatcccattcaaagttttggaagga
tctacatgtctgggtacagctctcccaactgaagagttctgtgtgcctctggactcatat
aggtctgagctgagccttcagccgataaccgatgaggatgctgacgatcaaggtgagcag
tttgagtgctcggagggtttcagctacgaagaattcagcaacaagctgcctgagacacgc
ctacagcagacctgccgtcgccgtggagatcagggtggtgtactgatggtcaacatggtg
ccattgagagatactgtgacattcaaacacaccggatgtgttggggataactttgatgtt
ccctttgtgcttcacctgtggccttccgtcctgcttcgcaacctgcttccttaccccatc
tcttacaaactgaaggacagtggagtctctacccctgaggccactttgaacccaggccac
tcagcccagcttcacactgcagtcatcgaccaatcaagtctcgatctccgcctactgaac
tacttggctcaggactggtcctctgagtacagtttccacagtgacaaggaagagatcacc
ttcatagtgttcgagtctctgcgagagaatgacgaagacgatggtgaagggatggagatg
aagagggctgagttggatatagcagtgcatgtaaaatatgacctggggcaaacggtggtt
gccatccactcaccgtattggatggtgaacaagacaggcaggttgctgcagtacaaggct
gatgatatccaccgtaaacacgccctggaatatgacatgcctctgctcttctccttcaag
cctcgttacttcctgaaaaacaacaaggtccgtcttatgatctcagacagtgaactctct
gatgatttctccctggatacagttggtagctatggagacgtcaaatgcaaaggccgatat
aaagattacttggttggtgtgaagattgacgcgagcagtttcagtctgacccgcatcgtg
actttcgtgccgttttacatgctggtcaacagaaccaagcacagtgtcttcatatgtgaa
gtggggcaggacaactggaccgaggctcagccagaacagtcagccattcccttctggcct
gagaatgacaccaagcagctaaagatcaaagtagaaggttgtttattgcctcctcggact
attgacttcacacgaccagaaaactgcttattgctacatctggacaattctgtgggtggg
atcactgtagatgtgaacttgtcagagcactcggccacaatccggttctctgagtaccac
gacggtgcagcccctttcctcattatcaaccacacaaaagaacagactctgcagttccat
cagagctctcagaaggaggctgaacaggaggagctggaggctgggaaagctgtgcactac
acctggactgaacccactggatcccgagagctttgttggaagtgtggtacttacagtggg
aagctgaagactgaggaggacctgcgtcaggacatgaacaatgaggcaaaactatttgtg
atctccttttatgaagggctccagcgcgtcgtgctgttcactgaggagaagcatatctac
aagatgctctgtgagaacgagaaggtgcagctggccgaacaggaaatcatcctctcacta
cagagcgtgggtgtgtctctggtcaacaacagcagtggccaggaggtctcttttattggg
atcacaagctctgatgtggtgtgggaattaaagccgaagaagaagaaccggtggaaaact
ctgagttctagagaagctgagatgctggagagcagcttcaaagagtacactgaatctgga
ccccaagaccccgtcatccacgacctggaaaacaacttccaggtgttctttactcccaat
ggcattgatatgaagatgtttcagccatgtgatgctcctctaagaaggcacttcttgcct
gggttgaaggtggagtacagcgtctcaccacgacagagtgcctaccgtgtccaaatccac
cgcattcagatccagaatcagctgccaggagccatcttcccctatgttttttaccctgta
aaactgccaaaatctatcaccatggatgcagaacccaaacctctaactgatatcagcatt
gtcaccagaacagcaggacactctgatatctctcgcatcaagtactttaaggtgttgatt
caagagatggacttgaagctggatcttggcttcctgtatgccatcctggacctgtttaca
cctgaaaatgccagcatcatgagctcagaacaggaggtggaactgtttgagaaggacata
gagtatataaagacggaactaaaccatgcctctgctgctgacaactctcctatcagcctc
tatgagtacttccacatctcccccatcaagcttcatctgagtttctctctgagtacggga
ggagaggacggcctgaaggagaagcgagataaagaactcattcccatccagtccctcaac
ctgctgctgaagagtatcggtgccacactcactgatgtgcaggatgttgtattcaagttg
gccttcttcgagttgaccttccagttttgtaccacccagcagctacaatgggaggtcatc
aggcattattccaagcaggctattaagcagatgtatgtgctggtgctgggcctggatgtc
cttggaaatccttttgggctgattagaggactgtcagagggagtggaagcattcttctat
gagccttatcagggagccatccaggggcctgaggagtttgttgaaggaatggctcttggg
gtgaaggctctggtgggaggagctgtcgggggaatagctggtgcagcctccaggatcaca
ggtgccatggcaaagggtgttgctgccataacgatggacgaggaataccagcagaagaga
cgagagactatgaacaaacaacccagtggcctcagagagggcctggccaggggtggaaag
ggattagtgtctggttttgtcagtgggatcacagggattgttaccaaacctattaaagga
gcccagaaggagggtgcagcaggcttttttaaaggtattgggaaaggtctggttggcgca
gtagccagacctacaggaggcattattgacatggccagcagcaccttccaagggatcaag
agggcagcagagacttcacaagacatcgcctctctgcgtcctcctcgcttcatccacgaa
gacggtgtcatacgaccatataaggagagtgagggcattggcagtcagatgctccagaaa
attgagaatggacgttttgccaagtacaggtactttgctcatgccaaggtcaatgattcg
gacttcctcatgatcaccaagaggggaatattttttgtgaccaaaggcacatttggccag
ctgacctgcgaatggcagtatctgtttgaagagttcaccaaggatccacagattgtagag
aaccggcggcttcgcatcgaggccaaggagagagtgaagtctgtcttccatgccaaagag
tttgggaagataataaacttcagaaatgctgagttagccaagtgggttcttgccagattg
gatgatgcaagagagagtttacccaaattctga
DBGET
integrated database retrieval system
