Anoplopoma fimbria (sablefish): 129101127
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Entry
129101127 CDS
T09102
Symbol
msh3
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
129101127 (msh3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
afb03400
]
129101127 (msh3)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
129101127 (msh3)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Mo-nitro_C
Motif
Other DBs
NCBI-GeneID:
129101127
NCBI-ProteinID:
XP_054466757
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Position
13:complement(9570226..9615110)
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AA seq
1128 aa
AA seq
DB search
MPKSAKKSSTAQTSISRYFGGQSRRGSSINQSTAQHQLSRGKKKLSPDHGDLGLSPKRAK
LCVQDQQVEDLDCEPSSCQSTKETTLTWSRGAAGLCSSTLEKLKGFTCSAEPGVPRREEQ
KTDVAGSSTICDRGGGALPPRDGTDQQNNKNSLQQTDGEFEEEEELKEKEEEDVKEEESS
GLHAAKQGFRLSQFAKSGGGGRGGRRRRQERGVELSPPSDSGNPSRRSKSAYTPLEQQVI
QLKQQHKDALLAVECGYKYRFFGEDAEIAAKELNIVSHLDHNFMTCSIPTHRLFVHVRRL
VSHGHKVGVVKQTETSAIKALGANRNALFSRQLSALYTKSTLVGEDVNPVCRLGDGEEGG
CGDVVPDPPDSFLLCISENWDKLKKQLTVGLVAVQPSTGDVLLDCFPDGQSRSELEGRVL
KINPVEILVPSDLSEQTHRLLQSIANASAQADDRVRVERRDSAQFEFASAMNTATEFYCH
APEKGSRSLSCVASLESPVICCLGPLIQYLQEFNLERVLRSESSFLRLSSESDGMNLSAA
TLRNLEILNNQTDGGVRGSLLWVLDHTRTPFGRRLMRKWASRPLTDPRSISERQDAVQEI
LESHSLTLNSVRSLLSRLPDLERGICSIYHKKSSTQEFYLISSGLSRLGSELQALLPAIQ
SQITSGLLRGLLLDTPDLLAPAQSHLKVLNERAAKTGNKTELFSDLSDFPVLRKRREQIQ
TVLSQIQDHRKEIRLTLKAPALDYVTVSGQEFLIEVKNSLSSTVPPDWVKISSTKAVSRY
HSPYLAERYKKLLQLREQLLLDCQREWTNFLDQFGEHYHTMKRAISHLATMDCLFSLAEV
AKQGDYCRPEVCEGQRQIMIRDGRHPAIDLLMGEHHQYVPNLTELQGEGRRTMIITGPNM
GGKSSYIRQVALICVMAQMGSYVPASEARLGMLDGIYTRMGASDNIYKGRSTFMEELTEA
SEIIFRATERSLVILDELGRGTSTHDGIAIAYATLEFFIRDVKALTLFVTHYPPLCELER
VYPEHVSNYHMAFLLNEPDITADTDDGEVQPEFITFLYQLTEGAAGRSYGLNVARLADIP
DHILQTAARKARELESMVNARRKNKKLLSDLWSVSDKSSLMGWLQSNS
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagtccgcgaagaagtccagcaccgctcagacctccattagcaggtactttgga
ggtcagagcaggagaggttcctccatcaaccagagtactgctcagcaccagctttcaaga
ggcaagaagaaactttcccctgatcatggtgatttgggattgtcaccaaaacgagccaag
ctttgtgtccaagaccagcaggtggaggatttggactgtgagccttcatcctgccagagc
actaaagagacgacgctaacctggagccgaggggcagccggcctctgctcctccaccttg
gagaagctgaaaggcttcacctgctcagccgagcccggtgtccctcggagggaagaacag
aagacagatgttgctggtagcagtacaatctgtgacagaggaggcggcgctctgcctccc
cgggacggaacagatcaacaaaacaataaaaacagtcttcaacagacagatggcgagttt
gaggaggaggaggagcttaaggagaaggaggaggaggacgtcaaagaagaggagagttca
gggctgcatgctgcaaaacagggcttccgcttgtcacagtttgccaagtcaggaggagga
ggacgcggaggacgccgacgacggcaagaaaggggtgtagagctgagtcctccatcagac
tccggaaacccctccagacgctcgaagagcgcgtacactcccctggaacagcaggtcatc
cagctgaaacagcagcacaaggacgccttgttggctgtggagtgtggatacaagtacagg
ttctttggggaggatgcagagattgctgcaaaggagctgaatatcgtcagtcacctggat
cataacttcatgacgtgcagcatccccacacaccgtttgtttgttcacgtcagacggctg
gtgtcccacggacacaaggttggtgtggttaagcagacggagacgtctgcaatcaaggcc
ttgggggccaataggaacgctcttttctctcgtcagctgagtgctctgtacaccaagtcc
actctggtgggagaggatgtgaacccggtctgcagactgggtgatggggaggaggggggc
tgtggtgacgtggtgccggaccctcctgacagcttcctgctgtgtatcagcgagaactgg
gacaaactgaagaagcagctcactgtggggctggtggcggttcagcccagcacaggagac
gtgttactggactgcttccccgatggtcagtctcgctctgagctggaaggtcgcgtccta
aagattaaccccgtggagatcctggtgccctctgacctctcagagcaaacccacagactc
ctgcagagcatcgccaatgccagcgctcaggctgatgaccgagtgagagttgagaggagg
gacagcgctcagtttgagttcgcctctgcaatgaacacagccaccgagttctactgccac
gccccggagaaaggctctcgctctctgtcgtgtgtagcgtccttggagagcccagtgatc
tgctgtctggggccgctcatccagtacctccaagagttcaacctcgaaagggttctaagg
agcgaaagctcattcctacgtctgtcctctgagtccgacggtatgaacctcagtgccgcc
accctcaggaacctggagatcctcaacaatcagacagatggcggcgtgaggggcagtctg
ctgtgggtgttggatcacactcgcactccgtttgggaggagactgatgaggaagtgggcg
agccggcccctcacagacccacggtctatctcagagaggcaggatgcggtgcaggagatc
ctggaatctcactcgctcactttgaattccgtcaggtccctgttgtcgcgtttgcccgac
ctggagagaggcatctgcagcatataccacaaaaagtcttccacgcaggagttctacctc
attagcagcggcctttctcgactggggagtgaactgcaggccttgctcccagctatccag
tcacagatcacctccgggctgctccgaggcctcttgttggacacccccgacctgctggct
ccggcccaaagccacctcaaggtgctcaatgaaagggctgccaagacaggaaataagacg
gagctgttctcagacctgtccgacttcccggtgctgcggaaaaggagggagcagatccag
actgtcctcagccagattcaggaccaccgcaaagaaatccgactgacgctgaaggccccg
gcgctggactacgtcaccgtctctggacaggagtttctgattgaggtgaagaactcgctg
tcgtccactgttccacctgactgggtcaaaatcagcagcaccaaggcagtgagcaggtat
cactctccttacctggcggagcgctacaagaagctactgcagctccgagagcagctgctg
ctggactgtcagagggagtggaccaattttctggatcagtttggggagcactatcacacc
atgaaaagggctattagtcacctagcaaccatggactgtctcttttcattggctgaggtg
gctaaacaaggggactattgcaggccagaggtgtgtgaaggtcagcgacagatcatgatc
agggacggcagacaccctgccatcgacttactgatgggagagcaccaccagtatgtgccc
aacctcaccgaactacagggcgaaggcaggagaactatgataatcactggtcctaatatg
gggggtaagagctcctacatccgccaggtggccctgatctgtgttatggctcagatgggc
tcctacgtcccggcctctgaggcccgcctgggcatgctggacggcatttataccaggatg
ggggcttctgacaacatttacaaaggccgcagtacgttcatggaagagctgactgaagcc
tccgagataatttttcgtgcaaccgaacgttcattagtcatcctcgatgagctgggacgg
ggaaccagcacccatgatgggatcgccattgcctatgccaccctggagttcttcatcaga
gatgtgaaagccctcaccctgtttgtgacccattaccctcctctgtgtgagctggagcgg
gtgtatcctgaacacgtgtccaactaccacatggctttcctacttaatgaacctgacatc
acagctgacactgacgacggagaggttcagccggagttcatcactttcctctaccagtta
actgaaggagctgcagggcggagctacggcctgaatgtcgcccgattggctgacatccca
gaccacatactacagaccgctgcacgcaaagcccgagagctggagagcatggttaacgcc
aggaggaagaataagaaacttctgtcagatctttggagcgtctcagacaaatcgtccctc
atggggtggctgcagtcaaactcttga
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