Anoplopoma fimbria (sablefish): 129101311
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Entry
129101311 CDS
T09102
Symbol
tncb
Name
(RefSeq) tenascin
KO
K06252
tenascin
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04510
Focal adhesion
afb04512
ECM-receptor interaction
afb04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129101311 (tncb)
04518 Integrin signaling
129101311 (tncb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129101311 (tncb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
afb00536
]
129101311 (tncb)
Glycosaminoglycan binding proteins [BR:
afb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129101311 (tncb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_TEN
fn3
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
DUF7949
Pur_ac_phosph_N
Fn3_Dep-1_2nd
fn3_2
EGF
Fn3_Dep-1_1st
hEGF
Motif
Other DBs
NCBI-GeneID:
129101311
NCBI-ProteinID:
XP_054467045
LinkDB
All DBs
Position
13:11579522..11617829
Genome browser
AA seq
1697 aa
AA seq
DB search
MGTKGFLFGCLTVALLLELSSAGLVKKVIRHRREALSPMKTQENLTLPHPDQPVVFNHVY
NINVPTTSLCSVDLDSPGDSELKHKSSPVDMQNTEHMEHTVDGDNQIVNQIVFTHRINIP
KQACGCNNQLPGIKDILNRLEMLESELSSLREQCSSGTGCCGAQVTGEVSTKPYCNGRGN
WSTDTCSCVCEPGWKGPNCTDAECPNDCQDQGRCVDGKCECFEGFGGDDCGIELCLLDCG
DYGHCVEGSCLCEEGFIGQDCAQTNCLNNCLGRGRCVDDECVCDEPWTGFDCSELICPND
CYDRGRCTNGTCYCDEGFTGEDCGELTCPGNCNNRGMCVNGQCVCQMGYSGDDCSKLTCP
KNCNERGHCFNGKCICDPGFEGVDCSILSCPDNCSDKGQCIDGECVCDLGYQGEDCGELS
CPNNCQDRGRCVNGQCMCNKGFAGEDCSIKTCPKACMGRGECVDGKCVCFVGFTGKDCGE
LTCPNDCLDRGHCENGQCVCHKGFTGEDCSEKTCPKNCLDRGYCVDGDCVCYEGFTGPDC
SVLTCPNDCQNQGSCENGVCVCNEGFIGEDCSEVSPPKDLKVVEVTPETVDLSWENEMRV
TEYLITYAPTAPGGLELDTRVPGDQKMTTIRELEPGVEYLISVYAVLNNKRSLPVSARVA
THLPEPEGLKFKSVRETSVEVQWDPLDVPFDSWNLIFRNTKEEDGEILNSLGRPETTFEQ
SGLGPGQEYEVKLEVVKNNKRGPPASQNVVTMIDAPSQVDVRDVTDTTALVTWFQPVAEV
DRVSVSYGPNSNPSDRTVVELSSTETQYHLGGLSPDTQYEVSLLARKGERTSIPVYESFL
TDLDAPRDLQTVELTDESITLEWKNSQAPVENYRIKYGPLSGGEHGELLFTPGPKDTTQA
KITGLRPGTEYGMGVTAVTDERESLPATTNAVTALDAPKDLTVAEVTETTMMLEWKRPLA
KLDTFRLIYVSADGHRVEEVVLGSSESHILRGLTPGMLYTISIIAERGRRTSAPTIISAP
TDEEKPVVTNVTVSDVSWDSFLLSWSAEEGAFEAFLIEVTDAETGAEWQNHTVSADARSL
AVSGLSSTTWYRANLYGVYRGALLDPVFADTITEDEPEVQALLVSDVTPESFSLAWTAEE
DAFDTFVVMVSEPVGPGQPSELVLGGETRSVAIADLTEDTEYRVEIFGLVLGRRSKSLEE
GVKTDLGSPKGIRFSDVTDTSATVHWVVPKARVDSNRVTYVPAHGGNAKTLTVDGSMSQT
VLPNLTPGVTYEVTVVTIKGQRESEPGSDSVTTALDKPRGLTAINITDTEALLLWQPAIA
TVDGYVITYSADSVAPVMERVSGNVVEFDMNSLTPATHYTVKVYAVRDLAKSAATTTEFT
TDVDAPQDLAATNIQTENGMLTWKPPRADITGYILSFEATDGTIREVVLSPTAVSYNMAQ
LSASTEYSVKLQAIAGPKRSRVITTVFTTTGVLYRFPRDCSQALLNGDTTSDLYTIYLGG
DESQPIQVYCDMSSDGGGWIVFLRRQSGRLEFFRNWKNYTAGFGDMNDEFWLGLSNLHKI
TAGGQYELRVDLSDKGETAYAQYDKFSISEPRTRYKVHVGGYSGTAGDSMTYHHGRPFST
YDHDNDIAVTNCALSYKGAFWYKNCHRVNLMGRYGDNSHSKGVNWFHWKGHEHSIEFAEM
KIRPSNFRNLEGRRKRS
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atggggactaaaggcttcctcttcggctgcttgaccgtggccctgctcctcgagctctcc
agtgccggtctagtcaagaaagtcatccgccatcgtagggaggctctgtcgcctatgaaa
acccaggagaacctcaccctgccccacccggaccagccggttgtgttcaaccacgtctac
aacatcaacgtccccaccacgtccctctgctccgtggacctcgattcgcccggcgactcc
gagctaaaacacaagagctcccccgtggacatgcagaacaccgagcacatggagcacacg
gtggacggcgacaatcagattgtcaatcagattgtcttcacccaccgcatcaatatcccc
aagcaggcatgcggctgcaacaaccagctgccaggcatcaaggatatcctgaacaggctg
gagatgctggaatcagagctgtctagtctgagagagcagtgcagcagtgggacgggctgc
tgtggagctcaggttacaggtgaagtttcaacaaagccctactgtaatggccgtggaaac
tggagcaccgacacctgcagctgcgtgtgtgaacctggatggaaaggacccaactgcacc
gatgcagaatgccccaacgactgccaggaccagggccgctgtgtggatggcaaatgtgag
tgctttgagggcttcggtggcgacgactgcggtattgagctctgtctgctggactgcggt
gactatggccactgtgtcgaagggtcctgcctctgcgaggagggcttcatcggtcaggac
tgcgcccagaccaactgcctcaacaactgcctgggacgtggacgctgcgtggacgacgag
tgtgtttgcgatgagccgtggacaggcttcgactgctccgaactcatctgtcctaacgac
tgctatgaccgcggacgctgcaccaacggcacctgctactgcgacgagggcttcaccgga
gaagactgcggtgagctcacttgccctggcaactgtaacaaccgtggcatgtgtgtgaat
ggccagtgtgtgtgccagatgggctacagtggagacgattgctcgaagctcacctgtccc
aagaactgcaacgagagaggccattgcttcaacgggaagtgcatctgtgatccaggattt
gagggtgtagattgctccatcctctcatgccctgacaactgcagcgacaagggccagtgc
attgacggagaatgtgtatgtgaccttggataccaaggcgaagactgtggcgagctctct
tgccctaacaattgccaggaccgtggccgctgcgtcaacggacagtgcatgtgtaacaaa
ggcttcgccggagaggactgcagcatcaagacctgtccaaaagcctgcatgggccgcgga
gagtgcgtggacggcaagtgcgtttgctttgttggttttactgggaaagactgcggcgag
ctgacctgccccaatgactgcttggaccgcggtcactgtgagaacggacaatgtgtttgt
cacaagggtttcactggtgaggactgcagtgagaagacctgtcccaagaactgtctagac
agaggttactgcgtcgatggcgactgtgtgtgttatgaaggtttcaccgggccggactgc
tccgtgctgacctgcccgaatgactgccagaaccagggaagctgtgagaacggagtgtgc
gtttgcaacgagggcttcattggagaggactgctctgaggtctctccacccaaggacttg
aaagtagttgaggtcaccccagagacggtggacctatcctgggagaatgagatgcgtgtg
accgagtatctgatcacctacgccccgacggcacctggaggtctggagctggacacgcgg
gtgcccggggaccagaagatgaccactattcgggagcttgagcctggcgtagagtacctg
atcagcgtctatgctgtgctcaacaacaagaggagtcttcctgtcagcgctcgggtcgct
acacatctgcctgagcctgaggggctcaagttcaagtcagtgcgggagacgtcagttgag
gtgcagtgggacccgttggacgttcccttcgatagctggaacctcatcttcaggaacaca
aaagaggaagatggtgagattcttaactccctcggccgtccagagaccacctttgagcag
tcgggcctgggccccggccaggagtacgaggtcaagctggaggtggtgaagaacaacaag
cgtggaccgcctgcctcgcagaacgtcgtcacaatgatcgatgcccccagccaggtggat
gtgcgcgacgtgacggacaccacggccctggtgacctggttccagcccgtggctgaggtg
gacagggtcagcgtctcttacgggcccaactccaacccctctgatcgcaccgtggtggag
ctctcctccactgaaacccagtaccacctgggaggcctcagccccgacacccagtacgag
gtgtccctgttggcccggaagggagagcggaccagcattcccgtctacgagtctttcctc
acagacctggacgcccccagagacctgcagactgtggagctgacggatgagagcatcact
cttgagtggaagaacagccaagcgccggtggaaaactaccgcatcaagtacggacctctg
tctgggggtgagcacggagagctgctcttcacaccgggacccaaggacaccacccaggcc
aagatcaccggcctgagacctggcaccgagtacgggatgggtgtgaccgcggtgacggac
gagcgggagagtctgccggcgaccactaacgcagtgactgccttggacgctcccaaggac
ctaaccgttgcagaggtgacagagaccaccatgatgctggagtggaaacgccccctggcc
aaattggacaccttcaggctgatttatgtgtcagctgacggccacagggttgaggaggtg
gtcctgggcagctccgagtcccacatcctgaggggccttacgcccggcatgctgtacacc
atcagtatcatcgcggaaaggggccgcaggaccagcgcccccaccatcatctcggcacct
acagacgaggagaagcctgtggtgaccaacgtcaccgtcagcgacgtgtcgtgggacagc
ttcctcctgtcctggtccgctgaggaaggggcgttcgaggcctttctgatcgaggttacc
gatgcagagacaggcgccgagtggcaaaaccacacggtgtccgccgatgctcgtagcctc
gccgtctcaggcctgtcctccaccacctggtacagggccaatctgtacggggtgtacagg
ggcgcgctcttagaccctgtctttgcagacaccatcacagaggacgaaccagaggtgcag
gctctcctagtctctgacgtcacccccgagagctttagtctggcctggacggccgaagag
gacgccttcgacacctttgttgtgatggtcagcgagcccgtgggcccgggccagccgagc
gagctggtgctgggcggcgagactcgcagcgtggccatcgcagatctcaccgaggacacc
gagtacagggtcgaaatctttgggctcgttttggggagacgctccaagtctttagaggaa
ggggtgaaaacagacctgggctcgcccaagggcatccgcttctctgacgtcaccgacact
tccgccaccgtccactgggtggttccgaaggctcgggtggacagcaacagggtcacttat
gtgcccgctcatggaggtaatgctaagacgctgacggtggacggctcaatgtctcagact
gtgctgcccaacctcacccccggggtcacctatgaggtcactgtcgtcaccatcaagggt
caaagggagagtgagcctggatcagacagcgtcaccacagctctggataaaccccgtggt
ctgactgcaatcaacatcacagacacagaagctctgctgctctggcagcctgccatcgcc
accgtagacggctacgtcatcacctacagtgcagactcagtggctccagtgatggagcga
gtatcgggaaacgtggtggagtttgacatgaactctctgacgccggcgacacactacact
gtgaaggtgtatgcggtgagggacttggccaagagtgcggccactacgaccgagtttacc
actgatgtggacgcccctcaggacctggcagctactaacatccagacggagaacggcatg
ctgacctggaagccacctcgtgctgacatcaccgggtacatcctcagcttcgaggctaca
gacggcaccatccgtgaggtggtcctcagtcccactgctgtctcctataacatggctcag
ctcagcgcctccacggagtattcagtcaagctgcaggccattgctggtccaaagagaagc
cgagtcattactactgtcttcaccaccactggcgtgctgtaccgattccccagggactgc
tctcaggccctgctgaacggcgacaccacatcagacctgtacaccatctatctgggtgga
gatgagagccagccgatccaggtctactgcgacatgagcagtgatggaggcggatggatc
gttttcctcagacgacagagtggtagactggagtttttccgcaactggaagaattacaca
gctggcttcggtgacatgaatgatgaattctggctgggtctttccaacctgcataagatc
acagctggaggtcagtatgagctgcgagtggacctgagcgataagggagaaacagcctac
gctcagtacgacaagttctccatctctgaacctcggacccgctacaaagtccacgtggga
ggatacagtggaacagcaggtgactctatgacctaccaccacggccgtccattctccact
tacgaccacgacaacgacatcgctgtcaccaactgtgccctgtcctataagggagccttc
tggtataagaactgccaccgtgtcaacctcatgggacgatatggagataacagtcacagc
aagggtgtgaactggttccactggaaaggccacgagcactcgattgagttcgccgagatg
aagatcaggccatccaacttcaggaacctggagggaaggaggaaacggtcctag
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