KEGG   Anoplopoma fimbria (sablefish): 129101319
Entry
129101319         CDS       T09102                                 
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog
  KO
K13174  THO complex subunit 5
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:afb00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    129101319 (thoc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:afb03019]
    129101319 (thoc5)
   03041 Spliceosome [BR:afb03041]
    129101319 (thoc5)
Messenger RNA biogenesis [BR:afb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     129101319 (thoc5)
Spliceosome [BR:afb03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    129101319 (thoc5)
SSDB
Motif
Pfam: FmiP_Thoc5
Other DBs
NCBI-GeneID: 129101319
NCBI-ProteinID: XP_054467066
LinkDB
Position
13:complement(3318001..3325641)
AA seq 684 aa
MSSDVLKKRKTKVLRSEGGTPETKRGRGEGEPQEVRVYSEDVELDSRDPEQDFLQYKESC
ESLATLMSEIQELKANGAKDGCAEVEQRRMQSCIHFMNLKKLNRLAHMRLKRGRDQTHEA
KQRVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSEEEFYQEAPPDISRPQLT
KNDTHQLTLARLDWELEQRKRLAEKYKESQTTKEKIQKSIEVKKEHLTSLQPGLNAIMQA
SLPVQEYLSMPFEQAQIQTEVARHLPPPLYVLFVQANAYGQACDKNLCVSISGDVDEAKA
LSKPPEDSQDDESDSDAEEEQEKTKRRRPTTGGQLDDKRREMLKRHPLSLCLDLKCKDGS
ILHLYFYYLMNLNIMTVKTKVSTATDLNTAISAGDLLKADTLLNCLYSGDQGQETPNPAN
RYQFDKVGIVSFADYVEDLGHPYMWVQSLGGLHFPKDPSEGVRVGSSLSASHMESTMKLL
RGRLQSRLALHKQFASLEHSIIPVSSECQNLFPAKIISRLARWTTTTHVEYMDLPYTRHV
TEAGLAKETDMYFMAVVERGTARLQAAVVLSPRYPEVSPLFSLSLSWKGERSGRTDDNLR
AMESEVNVFKNELQGPRPGHQLLTNQFSRLCVCLDVYLETEGQDDSVEGPREFPREKMCL
RTVRGPNRLKPFKYNHPQGFFSHR
NT seq 2055 nt   +upstreamnt  +downstreamnt
atgtcctcggacgtcctgaagaagaggaagacgaaggttctccgcagcgaaggaggaacc
ccagagacgaagagaggtcgcggagagggagaaccgcaggaggtgcgtgtgtacagtgag
gatgtggagctcgatagcagggaccctgagcaggactttctgcaatacaaagagtcatgt
gagagtttggccacactcatgagtgagatccaggagctgaaagccaatggagccaaagac
gggtgtgctgaggtggagcagagacgtatgcagagctgcatccacttcatgaatctgaaa
aaactcaaccgtctggctcatatgcgactgaagagaggcagagaccagacacacgaggca
aaacagagagtggatgtcctgcaccttcagttacagaacctgctgtatgaagttatgcat
cttcagaaggagatcagcaagtgtctggagttcaagtccaagcatgaggaaatagacttg
gtgtcggaggaagagttttaccaggaggcgccaccggacatttccaggcctcagctcaca
aaaaatgatactcaccaactcacactggcacgactggactgggagctcgaacagcggaag
aggttggcagagaaatacaaggagtcacagaccacaaaggagaagatccagaagagcatc
gaggtgaagaaggaacatctgacaagcttgcagccaggactcaacgccatcatgcaggcc
tccctcccagtgcaggagtacctgtccatgccttttgaacaggctcagattcagacagaa
gttgcccgccacctgcctccacctctctatgtcctgtttgttcaagccaatgcctatggc
caggcctgtgacaagaacctgtgtgtctcaataagtggtgatgtggacgaggccaaggcc
ctgtccaaacctccagaagattcccaggatgatgagagtgactcagatgcagaggaggag
caggagaaaacgaagagaagaaggccaactacaggtggccagctggacgacaaaagacgg
gagatgctgaaacggcatcctctgtccctctgcttagacctcaagtgtaaagatggcagc
atcctccatctctacttctactacctgatgaatctgaacattatgacggtcaagaccaag
gtctccaccgccacagacctcaacacagccatcagtgcaggggacctgctgaaagcagac
actctactcaactgtctctactccggcgaccaggggcaagaaacacccaatccagctaat
cgctaccagtttgataaagtcgggattgtttcctttgctgattatgtggaggacctgggc
catccctacatgtgggttcagagtctaggaggactacattttccaaaagatccttccgag
ggtgtgcgtgttggcagctctctgagtgccagccacatggagagcaccatgaagctgctg
aggggacgactccagtcccgcttggctttgcacaaacagtttgcctctctagagcacagc
atcatcccggtctccagtgagtgtcagaacctctttcctgccaagatcatctctcgttta
gctcgctggaccacgaccactcacgtggaatacatggatctgccatatactcgtcatgtg
actgaagctgggctggcgaaggagactgacatgtacttcatggctgtggtggaaaggggc
acagctcgcctccaggccgctgtggtgctgagtccccgttacccagaagtctctcctctt
ttctccctctccctcagctggaagggagagcgaagtggacgcaccgatgacaaccttcga
gccatggagagcgaggtcaatgtgttcaaaaatgaactacaagggccacgaccaggacac
cagctcctgaccaatcagttttcacgcctgtgtgtctgcctggatgtgtatctggagact
gaaggacaagacgacagcgtggagggaccacgagagtttccaagagaaaagatgtgtctg
cgcactgtcaggggtccaaatcgtctgaagccattcaagtacaaccaccctcagggcttc
ttcagccaccgctag

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