Anoplopoma fimbria (sablefish): 129101816
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Entry
129101816 CDS
T09102
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04137
Mitophagy - animal
afb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129101816 (vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
129101816 (vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129101816 (vcp)
03009 Ribosome biogenesis [BR:
afb03009
]
129101816 (vcp)
04131 Membrane trafficking [BR:
afb04131
]
129101816 (vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129101816 (vcp)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
129101816 (vcp)
Ribosome biogenesis [BR:
afb03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
129101816 (vcp)
Membrane trafficking [BR:
afb04131
]
SNARE
SNARE associated proteins
Others
129101816 (vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
129101816 (vcp)
Exosome [BR:
afb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
129101816 (vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
Vps4_C
RNA_helicase
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
ABC_tran
DUF815
AAA_24
NB-ARC
TsaE
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
129101816
NCBI-ProteinID:
XP_054467724
LinkDB
All DBs
Position
13:complement(3294721..3302975)
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGETKNDDLATAILKQKSRPNRLIVDESINEDNSVVSLSQTKMDELQLFRGDTVLMK
GKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIRREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFKWALSQSNPSALRETVVEVPNITWEDIG
GLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMSILKAN
LRKSPISKDVDIDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSSTAGG
SGPSHGSGGTGTGPVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgggaggggaaaccaaaaatgatgatctagccactgcaattctgaaacaaaag
agcagacccaacagactgattgttgatgaatccatcaatgaagacaacagtgtggtctct
ctctctcagaccaagatggatgagctgcagctcttccgtggagacacagtgctgatgaag
ggaaagaagaggcgggagaccgtgtgcattgtgctgtctgacgacacctgttccgatgaa
aaggttcgcatgaacagggtggtccgcaacaatctgagggtcagactcggtgatgtcatc
agcattcagccatgtcccgatgtgaagtatggaaagaggatccatgtcctccccatagat
gacacagtagaaggaattactggcaacttgtttgaggtctacctcaagccatactttctg
gaggcttacaggccaatccgcaaaggtgatattttcttggtcagaggaggcatgcgtgct
gtggagttcaaggtggtagagactgacccctctccctactgcatcgttgctcctgataca
gtcatccactgtgagggagagccaatcaggagagaggacgaggaggagtccctgaatgag
gttggctatgatgacattggaggggtgaggaagcagttagctcagatcaaagagatggtg
gagctgcctcttagacaccctgcactttttaaggccataggagtcaagcccccacgtgga
atccttctatatggaccccctggaaccggaaaaaccttgattgccagagctgtagccaat
gaaactggagctttcttcttcctgattaatggtcccgagatcatgagtaagctggccgga
gagagcgagagtaacctgagaaaggcctttgaggaagcagagaagaatgctcctgccatc
atctttattgatgagcttgatgcaattgctcctaagagagagaagactcatggagaagtg
gagaggcgcattgtgtcccagctgctgactcttatggatggtctgaaacaaagagctcat
gtgatcgtcatggctgccaccaacagacccaacagcattgacccagctctcaggagattt
gggcgttttgatagggaagtggacattggcatccctgacgccaccggcagattggagata
ctccagattcacaccaagaacatgaaactggctgacgatgtcgacctggaacaggtagcc
aatgagacccatggacacgtgggtgcagatctggctgctctctgctctgaggctgccctg
caggccatcaggaagaagatggacctgattgaccttgaggatgagaccattgatgctgag
gtcatgaactcacttgctgtcactatggatgacttcaagtgggccctgagccagagcaac
ccatctgcactgagggagacggttgttgaggttcccaacatcacctgggaggatattgga
ggtctggatgatgtcaagagggagctgcaggagttggtgcagtacccagtggagcaccca
gacaagttcctcaagtttggcatgaccccgtccaagggcgtgctgttctacggtccccct
ggttgtggaaagactctgctggccaaagccatcgccaacgagtgccaggcaaatttcatc
tccattaaaggaccggagctgctcaccatgtggtttggagagtctgaggccaacgtcaga
gagatctttgacaaggctcgtcaagcagccccatgcgtcctcttctttgatgagctggac
tccatagccaaggcccgtggtggcaacgtgggagatggtggcggagccgccgaccgcgtc
atcaaccagatcctgaccgagatggacggcatgtccagcaagaagaatgtcttcatcatt
ggagccacaaacagaccagacatcatcgaccctgccatcctgagacctggccgtctggat
cagctcatctacatccccctgcccgacgagaagagcaggatgagcatcctgaaggccaac
ctccgcaagagccccatcagcaaggatgtggacatcgacttcttggcaaagatgaccaat
ggcttctctggagcagatctcacagagatctgccagcgggcgtgtaagctggccatcaga
gagagcatcgagaatgagatccgcagagagagggagaggcagaccaacccgtcagctatg
gaggtggaagaggatgatcctgtgccagagatcaggaaagaccactttgaggaggcaatg
cgatttgctcgtcgctccgtcagtgacaatgacatccgcaaatatgagatgttcgcccag
acactgcagcagagccgtggctttggcagcttcaggtttccctccagtactgcaggcggc
agtggtccgagccacggctcaggaggaactggaacaggtccagtgttcaatgaagacaac
gacgatgacctttatggataa
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integrated database retrieval system
