Anoplopoma fimbria (sablefish): 129102035
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Entry
129102035 CDS
T09102
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129102035 (vldlr)
Membrane trafficking [BR:
afb04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
129102035 (vldlr)
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Paralog
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF
Motif
Other DBs
NCBI-GeneID:
129102035
NCBI-ProteinID:
XP_054467940
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Position
14:complement(20814235..20866189)
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AA seq
862 aa
AA seq
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MVTSAPGILLLLVCLRHCVNVHGTKTECEASQFQCGNGRCIPSVWQCDGDEDCTDGSDEN
SCVRKTCVEVDFVCRNGQCVPKRWHCDGEPDCEDGSDESVEICHMRTCRVNEFSCGAGST
QCIPNFWKCDGEKDCDNGEDEVNCGNITCAPNEFTCASSRCISRNFVCNGEDDCGDGSDE
VECAPSSCGPSEFQCGNSSCIPASWVCDDDVDCQDQSDESPSRCGRHPTPPAKCSSSEMQ
CRSGECIHKKWRCDGDPDCKDSSDEANCPVRTCGPDQFKCDDGNCILGSRQCNGLRDCSD
GSDEANCKNMTQCNGPEKFKCRSGECIEMSKVCNKARDCPDWSDEPIKECNLNECLMNNG
GCSHICKDMVIGFECDCTPGLQLIDHKTCGDINECLNPGICSQICINLKGGYKCECHNGY
QMDPTTGVCKAVGKEPCLIFTNRRDIRRLGLERKEYTQIVEQQRNTVALDADFGQQMIFW
ADLGQRAMYSTVLDKRGDVGTHNKVIDNVQTPVGIAVDWIYKNLYWSDLGTKTISVANFN
GTKQKVLFNRGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVATDIQWPN
GITLDLIKGRLYWVDSKLHMLCSVDLNGDNRKKVLQSPDYLAHPFALTVFEDRVFWTDGE
NKAIYGANKFTGSDVVTLASNLNDPQDIIVYHELIQLSGTNWCAEKGENGGCSYMCLPAP
QINKHSPRYTCVCPEGQELAADGQRCRPDHSTKGPSKDDGKALIQPPKEANVSTSIQVNS
TARGSAAAWAILPVLLIAMAAAGGYLMWRNWQLKNQKSMNFDNPVYLKTTEEDLNIDITR
HGANVGHTYPAISIVSTEDDLS
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgtccgctccggggatccttctgctgctggtgtgtctacggcactgcgttaac
gtgcacggtactaagacagaatgtgaggccagccagtttcagtgtggaaacggtcgctgc
atcccttccgtctggcagtgtgacggagacgaggactgcaccgatggcagtgacgagaac
tcctgtgtcagaaagacttgtgtggaggtggactttgtgtgtcgcaacggccaatgtgtc
cccaaacgatggcactgcgatggggagccagactgcgaggacgggtccgacgagagcgta
gaaatctgccacatgaggacgtgtcgtgtgaacgagtttagctgcggagcgggctccact
cagtgtatccccaacttctggaaatgtgacggagagaaggactgtgacaacggagaggac
gaggtcaactgtggcaacatcacctgtgctcccaatgagttcacgtgcgccagcagccgc
tgcatctcccgtaactttgtgtgtaacggcgaggacgactgtggcgacggctctgatgag
gtggagtgtgcgccctcctcctgtggtcccagtgagttccagtgtggaaactcatcgtgc
atcccggccagctgggtgtgtgatgacgacgttgactgccaggaccagtcagatgagtct
ccgtctcgttgcggccgtcacccgacgccgccagccaagtgttcgtccagtgagatgcag
tgccgctcaggagagtgtattcacaagaagtggaggtgtgatggagaccctgactgcaag
gacagcagcgacgaagccaactgtcctgttcgcacttgtggaccggatcagtttaaatgt
gatgatggaaactgtatcctgggcagcagacagtgtaacggcctcagagactgctccgat
ggctcagacgaagccaactgcaaaaacatgacccagtgtaacggaccagagaagttcaaa
tgccgcagcggggagtgtatcgagatgagtaaagtgtgcaacaaggcccgagactgtcct
gactggagcgacgaacccatcaaggaatgcaatctaaacgagtgtctcatgaacaacggc
ggctgctctcacatctgcaaagacatggtgattggctttgagtgtgactgcacacctgga
cttcagctcatagaccacaagacctgtggagacatcaatgagtgtctgaaccctgggatc
tgcagtcagatctgcatcaacctgaagggcggatacaagtgcgaatgccacaacggctac
cagatggatccgaccaccggagtctgcaaggctgtcggtaaggagccctgcctgatcttc
actaaccgccgtgacatccgtcgtctgggtctggagaggaaggagtacactcagattgtt
gagcagcagaggaacacagtggctctggatgcagactttggacagcagatgatcttctgg
gctgacctgggccagagggccatgtatagcactgtgctggacaaacgtggggacgtgggc
acccacaacaaagtgatcgacaatgtccagactcccgtgggaattgccgtggactggatc
tataaaaacttgtactggtctgatctcggcaccaaaaccatttcggtagccaacttcaac
ggaaccaaacagaaagttctgttcaacagaggcctcaaagaaccggcatctatcgctgtg
gatccgctgtctgggtttctgtactggtctgactggggagagccagccaagattgaaaaa
tctggtatgaacggagtggacagacaggttctggtagcgacagacatccagtggcctaat
ggaatcaccttggatctgatcaaaggcaggttgtactgggtggactccaagctgcacatg
ctctgtagcgtcgacctgaacggagacaacaggaagaaagtcctccaatctccagactac
ctggctcatccctttgctctcactgtgtttgaggatcgagtcttctggacagatggtgaa
aataaagccatctacggcgcaaacaagttcacaggctctgacgtggtgacgctggccagc
aacctgaatgatccccaggacatcatagtgtaccacgagctgatccagctgtctggcact
aactggtgtgcagagaagggagaaaacggcggctgtagctacatgtgtctacctgcaccg
caaatcaacaaacattcccccagatacacctgtgtgtgtccagagggacaggagctggct
gctgacggccaacgctgcagacctgaccattctaccaaaggtccctcaaaggatgatggg
aaagctctgatacagccacccaaagaggcaaacgtgagcacgtcgatccaggtgaactcc
acagccagagggtctgctgctgcctgggccatactgcccgtcttgctcatagcgatggcg
gcggcgggcggatacctgatgtggagaaactggcagctgaagaaccagaagagcatgaac
tttgacaaccccgtctacctgaagaccacggaagaagacctcaacatcgacatcacccgg
cacggcgccaacgtgggtcacacctaccccgcgatttcaatagtgagcacagaagacgat
ttatcatga
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