Anoplopoma fimbria (sablefish): 129102050
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Entry
129102050 CDS
T09102
Symbol
thbs4b
Name
(RefSeq) thrombospondin-4-B
KO
K04659
thrombospondin 2/3/4/5
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04145
Phagosome
afb04510
Focal adhesion
afb04512
ECM-receptor interaction
afb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129102050 (thbs4b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
129102050 (thbs4b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
129102050 (thbs4b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129102050 (thbs4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129102050 (thbs4b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129102050 (thbs4b)
00536 Glycosaminoglycan binding proteins [BR:
afb00536
]
129102050 (thbs4b)
Membrane trafficking [BR:
afb04131
]
Endocytosis
Phagocytosis
Opsonins
129102050 (thbs4b)
Exosome [BR:
afb04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
129102050 (thbs4b)
Exosomal proteins of colorectal cancer cells
129102050 (thbs4b)
Exosomal proteins of bladder cancer cells
129102050 (thbs4b)
Glycosaminoglycan binding proteins [BR:
afb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129102050 (thbs4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
EGF
DUF7630
cEGF
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
129102050
NCBI-ProteinID:
XP_054467957
LinkDB
All DBs
Position
14:complement(6820820..6836252)
Genome browser
AA seq
940 aa
AA seq
DB search
MGVWTALLLASQLLLKLSLNVKAQALVYDLLTSPDCLPDLLQGGLAEQGVHEAFILASFK
LQPKTGTSVFTLYNPQDNSKYFEFTVMGKLNKAVLRYMRIDKRMSSVSFNNLVLADGQQH
RLLFHLKGMQQQGPGGVELHLDCRLVEKVGDLPAAFQGLPAGYGTVDLKTMQAREQESLD
ELKLVVGDTFENVASLQDCHFQQRDSVQTLGVNTKQLSNQMLELTKVINDLKDVLIQQVK
ETSFLRNTISECQACGLGGTEVVKPRCTPGVCFRNDMCVETADGVECGQCPDGYTGDGFN
CDDVDECQFNPCFPGVKCVNTAPGFRCDACPLGYTGLAVEGVGIVYAQTNKQVCDDVDEC
KEPNNGGCAANSVCHNSVGSYHCGSCKTGFTGDQVKGCKPEISCGNSLTNPCDVNAQCIA
ERDGSIHCQCGIGWAGNGFLCGKDTDIDGYPDDKLKCKDVFCKKDNCIFVPNSGQEDADR
DGYGDACDDDADGDGIPNEQDNCRLKANLDQRNSDKDSHGDACDNCRTVENPDQWDTDSD
GKGDACDDDMDGDGLKNFLDNCQRVQNRDQLDRDGDGVGDACDSCPDTPNPNQSDIDNDL
VGDSCDTNQDSDGDGHQDTKDNCPFVINSSQLDSDKDGLGDECDDDDDNDGIPDSLPPGP
DNCRLVPNPDQIDDNGDGVGDVCESDFDQDKVIDRIDNCPENAEVTLTDFRAYQTVVLDP
EGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIF
GYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSRSGPGEHLRNSLWHTGDTN
DQVRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGTELVADSGVTIDTTMRGGR
LGVFCFSQENIIWSNLKYRCNDTIPEDFQEFSTQHERDSL
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtatggacagccctgcttctggcctcgcagctgctattaaaactgagcttaaac
gtaaaagcccaggctttagtctatgatctgctcacctcgcctgattgcctgccagacctg
ctgcaggggggtctggccgagcaaggggtgcacgaggctttcatcctagcctccttcaag
ttgcagcccaagaccggaaccagtgtgtttaccctgtacaacccccaggacaacagcaag
tactttgagttcaccgtgatggggaagctcaacaaagctgtgttacgctacatgcggatt
gacaagaggatgagctcagtatccttcaacaacctggtgctggcagatggccaacagcac
cgactgttgttccacctgaaggggatgcagcagcaggggccaggcggggtggagctgcat
ctggactgcaggctggtggagaaggtcggggatctccctgctgccttccaaggtttgcca
gcaggctacggtacggtggacctgaagaccatgcaagccagggagcaggagagtttggac
gagctcaagctggtggttggggacacatttgaaaatgttgcgtcactacaagactgccac
ttccaacaaagagactccgtccaaactctgggggtcaacacgaagcagctgtccaatcaa
atgctggagttaaccaaggtgataaatgacctgaaagacgtcctcattcagcaggtcaaa
gagacctcattcctcagaaacaccatttcagagtgtcaggcttgtggtctgggtgggaca
gaggtggtgaaaccaaggtgtaccccaggggtctgtttccgtaacgatatgtgtgtagag
acagcggatggtgtcgagtgtggacagtgtcctgacggctacactggagatggtttcaac
tgtgatgatgtggacgagtgccagtttaacccctgcttccctggagtgaagtgtgtgaac
accgccccgggcttccgctgtgacgcctgtccgctgggctacaccggcctggcagtggag
ggtgtcggcatcgtgtatgcccagaccaacaaacaggtctgtgacgacgttgacgaatgt
aaagagcccaacaacggaggctgcgccgcgaactccgtctgtcacaactctgtgggctct
tatcactgcggcagctgtaagacaggtttcacaggagaccaagtgaagggctgtaagcca
gagatcagctgcggaaacagcctgaccaacccatgcgatgtcaacgcccagtgtattgca
gagagggacgggtcaatccattgtcagtgtggaattggctgggccggaaacggattcctg
tgtgggaaggataccgacattgacggatacccagatgacaaactcaaatgcaaagatgtg
ttctgtaaaaaggataactgcatcttcgttcccaactccggtcaagaggatgcagacagg
gatggttacggagacgcctgtgacgacgatgccgatggtgacggtataccaaacgagcag
gacaactgccggttgaaggccaacctggaccagaggaacagcgataaggacagccacggc
gacgcctgtgataactgtcgcacggtggagaacccggaccaatgggacaccgacagcgac
ggcaaaggagacgcctgcgatgatgacatggacggagacggcctgaagaacttcctggac
aattgccagcgtgtccagaacagagaccagctggaccgggacggagacggagtgggagac
gcctgtgacagctgccccgacacccccaacccgaaccagtccgatattgacaacgacctg
gttggagactcctgtgacacaaaccaagacagtgatggcgacggtcaccaggataccaag
gataattgcccattcgtgataaatagctcccagctggacagtgacaaagacgggcttggt
gacgagtgtgacgatgatgatgacaatgatgggatccctgacagtttaccaccgggaccg
gacaactgccggctggtaccaaatcctgaccagattgacgacaacggtgatggcgttgga
gacgtgtgtgagtctgacttcgaccaggacaaagtgatcgacaggattgacaactgtccc
gagaatgctgaggtcaccttgactgacttcagggcctatcagacggtggtgctggaccct
gagggcgacgcccagattgaccccaactgggttgttttgaaccagggaatggaaattgtc
cagaccatgaatagtgacccaggacttgctgttggttacactgctttcagtggagtggac
tttgaaggaacctttcacgtaaatacagtgaccgacgacgactacgccggcttcatcttt
ggctaccaggactcgtcctccttctacgtggtgatgtggaagcagaccgaacagacctac
tggcaggcgacgcccttcagagctgtggctgagcccggcatccaacttaaggctgtgaag
tctagatcgggccccggggagcacctgagaaactcgctgtggcacacgggagacaccaac
gatcaggtgcgtctgctgtggaaggaccccagaaacgtaggctggaaggacaaggtgtcc
taccgttggtacctgcagcaccgcccacaggttggatacatcagggcgcggttttatgaa
ggaaccgagctggttgcagactctggtgtgacaattgacacgaccatgcgaggaggacga
ctcggtgtgttctgtttctctcaagaaaacatcatctggtccaatttaaaataccgctgc
aatgacaccatcccagaggatttccaggagttcagcactcagcacgaacgtgactcactc
tga
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