Anoplopoma fimbria (sablefish): 129102082
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Entry
129102082 CDS
T09102
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor, RNA polymerase I, subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afb03021
]
129102082 (taf1c)
Transcription machinery [BR:
afb03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
129102082 (taf1c)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Beta-prop_WDR36-Utp21_1st
Motif
Other DBs
NCBI-GeneID:
129102082
NCBI-ProteinID:
XP_054468017
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All DBs
Position
14:complement(11486490..11504628)
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AA seq
1089 aa
AA seq
DB search
MTNTMDYQFPQQLFPSFYNCGPPDAVLRHCGAGDWGCYDRVVPQGSSGPLSSWTFTSRHQ
ARGETWRHTEPVPVPLMSPKSTVLWPSKPPDPLDFTEHIQNFFLDHCQDAFGCMGEILSE
NFEQVQRERYGKESVYNVRSALDMMKFKMCPLSYSSKSLDVYSALLSDVVPAVPTELLGS
LLHEELTEQRDRALFSEGATGGALAFVPFSQSGSDPQRGCLLYPGNQGLDRLNFHRVELQ
HHRGGSSSVDASSSDPFSFQLNGPIRQISSTSMFNDCCVAVRSDRLCGVWRFSEQNKPRL
LQVVNTGEVATCVSVSPHVLGEVLVASESGAANLWSVGRGMQKVREEDANLYFNAKSSWR
WCEFSAHPRVMVYADRTGVELTDIRESPVSSHTLFSISNTPECRSGERLILSRYLGHVHT
FQHIVTTQYSAYIMDERFPCMPMLKWDHMMKSPPMFCLAVCGSASSGSTVGGARTTKVLL
GSHNSQEITLLQYSGGRAEASSSQGPPQALLRPRDSLKHLPVQIPHRLDLATSRLSSPAA
GLTCIQKRGGREAGGDECICILQLTEAGDIFYQTLEPEQPDTSRPPAAEDQPPPQPALKE
TTTSGGKTAQQLRPPHPKLVVSDTSSDEDVIGPTQGPNVPRFVAETPERDVYSDSSSEDL
EPRGRSRLPKHLRLEVIVNEDPEMDGVSGPDAGVKDGEGCRDNPEEPGDVEVTGGGGSSS
SGRAGPAERPVQLSDGVLVTWKRWLQKLVQKSRKKKPRPRRPQHLTVKTKDLQLPVNEAK
DPTEEERVQSLRNDLRACMSKGSLLVHGAVSAPLQAPALVTVPDEVDTEVWMDEISQRLT
VSWQGEGAWRAWWDEQLGLNREEKVTALRRKRRREKEAKRATGRRLDLVGSFASSLSYQS
GLSDFSDSMGWSSAASQGAPSDNEGYLSHLEGFLESGTPRATTPTTPSATQTHTPAATLT
TTPQSVRYTQGDQQTPGSTIALSQTPKHESTLANQRRRKRPAEDYLRSLFASQDEPSQHD
SYFPDGESTTHHPPPPVAPNSSQRSLRTDLSQEAHLWSGLSQSLPFSQSSQGRPGPSQLK
MKKKSRMGF
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacacaatggattaccagttcccacagcagctgtttccttctttctacaactgc
gggccgccggacgcggtcctgagacactgcggtgccggggactggggctgctatgaccgc
gtcgtgcctcagggcagctcaggtcccctctccagctggacgtttacatccagacatcag
gccagaggggagacgtggcgtcacactgagccggtacccgttcctctcatgtctcctaaa
agcactgttctttggccttcgaagcctccagacccgctggacttcacagaacatatacag
aacttcttcttggaccactgccaggatgcctttgggtgcatgggtgaaattctgagcgag
aacttcgaacaagtacagagagagagatacggcaaagagtctgtttacaacgtgagaagc
gccctcgacatgatgaagtttaaaatgtgcccgctgtcgtactcctccaaatctctggac
gtgtatagcgccctgctgtcggacgtggtgcccgccgtgcccaccgagctgctcggctct
ctgctgcacgaggagctgacggagcagagggaccgcgccctgttctccgagggggccaca
gggggggccctggccttcgtccccttctcacagagcggcagtgaccctcagcgcggctgc
ctcctctaccctggaaaccagggcctggaccgcctcaacttccacagagtagagctgcag
caccacagaggaggttcctccagtgtggacgccagcagcagtgacccgtttagcttccag
ctgaatggccccatcagacagatcagctctacctccatgttcaacgactgttgcgtcgcc
gtgcggtccgatcgactgtgtggagtctggcggttcagtgaacaaaacaagcctcgtctg
ctgcaagttgtcaacaccggagaggtcgcgacctgcgtcagcgtcagtcctcacgtctta
ggtgaagttctggtggcgagtgagagtggagcagcaaacctgtggagcgtcggcagaggg
atgcagaaggtccgggaggaagacgccaacctgtacttcaacgcaaagtcgtcgtggcga
tggtgcgagttctccgcccacccgagggtgatggtgtacgcagacaggacgggggtggag
ctgacggatatcagggagagtccggtctcgagtcacactctgttcagtatcagcaacacc
ccggagtgtcgcagtggggagaggctcattctgtccagatatctgggacacgtccacacc
ttccagcacatcgtcaccactcagtactcggcctacatcatggatgagcgcttcccctgc
atgcccatgctcaagtgggatcacatgatgaagtcccctcccatgttttgtcttgctgtg
tgtggctccgcctcctctggctccacagtgggcggcgctaggaccactaaggtgctgctg
ggctctcataactcccaggaaatcacactgctgcagtactcaggaggcagagcggaggcc
tcttccagtcaaggtcctcctcaggcgctgctcagacccagagacagtctgaaacacctt
cctgtccagatccctcaccgcctggacctcgccaccagcaggttgtcctcacctgctgca
ggtctgacttgtatccaaaagagaggaggaagagaggccggtggggatgagtgcatctgt
atcctccagctgacggaggcgggggacattttctaccagaccctggagccagagcagccg
gacacctctagacctccagcagcagaggaccaaccgccgccacaaccggctctgaaagaa
accacaacttcaggggggaaaaccgctcaacagcttcgaccaccgcatcctaaactggtt
gtatcggacacgtcgagcgacgaggacgtaatcggaccgacccagggcccgaatgtgccg
aggttcgtggctgaaacaccagagagggacgtgtactctgactcttcctctgaggattta
gagccccgagggagaagtcgtttaccgaagcatttaaggctggaagtcatcgtcaacgaa
gatccagagatggatggagtgagcggaccggatgcaggtgtgaaagatggagagggatgt
agagataacccagaggaacccggcgatgtggaggtaactggcggtggaggctccagcagc
tcgggtcgcgctggtcctgctgagcggccagtacagctcagcgatggagttcttgttacg
tggaaacgttggctccagaagttggtgcagaagagtcgcaagaagaagccccgtccacgc
cgcccacagcacctcacggtcaaaaccaaagacctccagctaccggtcaacgaggcgaaa
gatccgacagaagaggagcgcgtgcagagcctgaggaacgatctgagagcgtgcatgtcc
aagggctcgctgctggtccacggtgccgtctccgccccccttcaggccccagccttggtt
acagttccagacgaggtggatacagaagtatggatggacgagatcagccaacgcctgacc
gtctcctggcagggcgagggggcgtggcgggcatggtgggatgagcagctcgggctgaac
agggaggagaaggtgacggctctgaggaggaagaggaggagggagaaggaggcgaagagg
gctacgggccgacgcttggatctggtggggagcttcgcctcgtccctcagctaccagtcc
gggctgagcgacttctccgactcgatgggctggtcctccgcagcgagccagggggcgccg
tcggacaacgaaggttatctgtcccatctggagggctttctggagagcgggacgccgaga
gccacgacacccaccacaccctctgccacacagactcacactccagctgccacactgacc
accacacctcagagtgttaggtacacacaaggtgaccagcagactcccggcagcaccatc
gcactctcccagacaccaaaacatgaatccacactggccaatcagaggagacgcaaacgt
ccagcagaggactacctcagatctctgtttgcatcacaggatgagccctcgcagcatgac
agttatttcccggatggggagagcaccacgcaccacccacctccccccgttgccccaaac
tcctcccagaggagcctccggacggacctgtcccaggaggcccacctctggtcgggtctc
tcccagtctctgcctttttcccagagctcacagggtcgaccggggccgtcgcagctcaag
atgaagaagaagtctcggatggggttttga
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