Anoplopoma fimbria (sablefish): 129102109
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Entry
129102109 CDS
T09102
Name
(RefSeq) tenascin-like
KO
K06252
tenascin
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04510
Focal adhesion
afb04512
ECM-receptor interaction
afb04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129102109
04518 Integrin signaling
129102109
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129102109
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
afb00536
]
129102109
Glycosaminoglycan binding proteins [BR:
afb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129102109
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_TEN
fn3
EGF_Teneurin
Fibrinogen_C
EGF_2
EGF_Tenascin
FN3_DSCAM-DSCAML_C
Fn3_PBP1
Fn3_Dep-1_3rd
DUF7949
EGF
Pur_ac_phosph_N
Fn3_VIN3
NDNF
hEGF
EGF_PEAR1L
SPE9_EGF_3rd
NDNF_C
Motif
Other DBs
NCBI-GeneID:
129102109
NCBI-ProteinID:
XP_054468063
LinkDB
All DBs
Position
14:3747231..3776750
Genome browser
AA seq
1814 aa
AA seq
DB search
MGTRGVLSCLILTALLSLSNAGLVKKILRHRRQTLEPPNEHNITLPSADHPVVFNHVYNI
NVPASSLCSVDLDAPGSTQIRPADTAVSSGDHIVEHTVDGENQIVFTHRINIPRRACGCD
KDLPGLKDLMSRLEMLEGEVSALRDQCNGDTACCSAQVTGEVGTKPYCHGHGNYSAETCG
CICEPGWTGPNCTKPECPGNCQNQGRCVDGKCECFKGFSGPDCSFEVCPADCGANGQCVR
GVCICSDGFFGEDCSFEVCPVDCGANGQCVRGVCICSDGFFGEDCSFEVCPVDCGANGQC
VRGVCICSDGFFGEDCSFEVCPVDCGANGQCVRGVCICSDGFFGEDCSQTKCLNNCFGRG
HCDDGYCVCAEPWTGSDCSELICPKDCYDRGRCNNGTCSCDEGFTGEDCGERTCTNNCHG
NGFCVDGRCVCAAGFSGDDCSRLTCLNDCNDRGTCFNGMCICDIGYQGADCSQLACLNNC
NNRGQCINGQCACDVGFQGDDCAELSCPNDCRHRGRCVNGQCVCEEGFVGEDCSIKTCYS
NCYGRGECIDGLCVCHVGFTGEGCGELSCPNNCRNRGRCVDGQCVCDEGFSGEDCGQKAC
PNDCLARGRCVDGKCVCREGFSGDDCSVHACPGNCNNRGRCVDGKCECEGGYGGESCAEL
SCLNDCQDKGRCVDGRCVCEEGYIGDDCSEVSPPKDLTVGDVTSDTVDLSWNNEMLVTEY
FVTYVPTSPGGLQMEFTVTGDKTAATVKELEPGLEYLISVYAVLSNKKSVPISARVATEF
PKPEGLIFKAVRETSVEVMWDQLDISFDGWEIYFRNMKEENGKVVSSLPPSQNHFVQSGL
GPGQEYEVSINIIKNNTRGPQTSQKVTTKIDGPRQVEVKDMTDSTALVGWSQPVAPTDRL
TMFYWPSSDPSDETRVEISPPDKQHNIDGLRPDTEYTVSLVSVRGELASDPATTTFTTAL
DAPVDLLAVSATDDSITLEWTNGQADVGSYLVKYTPISGATHGEELIPRGPGDTTKTTIT
GLNPGTEYGIGVTAVKNERESIPATTNAATDIDPPRDFKETESTETSLSLRWQKPRAKVG
AYRLVYVSKDGQAGEAEIPPAATSYVLSNLTPGMSYNITLTAERGLKRSTPVMLSASTEE
LKPMVVNLTTSDITWDGFTASWSPIGGEFDSFVIEVTNLENFEESQNLSLSGDALSLGLS
GLNPNTSYMVGLFGMYQGSFLEPVYIEATTEAESEVEHLFVSDITADGFRLSWTADEDLF
DRFVIKIRDGKRLAHPQEYSVRGADRTKVLTGLMSGTEYEIELYGVSLDQRSQPITGVAQ
TGLSTPRGLSFTEVTESSAVVHWSMPRSPVDNYRITYLPFEGGSPLMVTVDGDVFEALLP
DMIPGKMYQVTVSAVKGLEESDPSTDTVITALDRPQALTPANVTHTSALLVWQPSVATVD
GYVITYSADSVSHMVEHVSGNTVEFEMGSLAPGTHYTVGVHATKEAQRSDSAVTEFTTDV
DPPRDLTAVNIQTDSATLTWKPPQAAVTGYTLTFSSADGSIREVVLSPTASSYSMAQLTG
STEYNVKLQAIAGAQRSRHVTTVFTTIGQLYRRPKDCAQTLLNGETTSGLYPVYVGGEES
QPIQVYCDMTTDGGGWTVFLRRQNGKLNFYRNWKNYTAGFGNLNDEFWLGLSNLHKITNS
GHYEMRVDLRDGGELVYAQYDKLTIAEPRTRYKIYLGAYSGTAGDSMTYHQGRPFSTFDN
DNDIAVTNCALSYKGAFWYKNCHRVNLMGKYGDNSHSKGINWFHWKGHEHSIEFAEMKLR
PANFRNFEGRKKRS
NT seq
5445 nt
NT seq
+upstream
nt +downstream
nt
atgggtacacgaggcgttctgagctgcctcatcctgaccgctttgctcagcttatcaaac
gccgggcttgtgaagaaaatcctacggcatcgacgacagactctggaaccccctaatgaa
cacaacatcacgctgccgagcgcggaccatcccgtggtgttcaaccacgtctacaacatc
aatgttcccgccagttccctgtgctcggtggacctggacgctccagggagcacgcagatc
cgtcctgcagacacagcggtctcctcgggcgatcacatcgtcgagcacaccgtcgatggg
gagaaccagatcgtcttcacccaccgcatcaacatccctcgacgggcctgcggttgcgac
aaagacctacctggcctgaaagacctcatgagccgactggagatgcttgaaggagaagtt
tcagcactgagagatcagtgcaacggtgacacggcctgctgcagcgcacaggtcacaggt
gaggtgggaactaaaccttactgccacggtcatggaaactacagcgctgaaacctgtggc
tgcatatgtgagccgggctggacgggacccaactgcactaaacccgagtgtcccggtaac
tgccagaaccaaggccggtgtgttgacggaaaatgtgagtgcttcaagggcttcagcgga
ccagactgctcctttgaggtctgccctgcggactgtggagcaaacggccagtgcgttcga
ggtgtttgcatctgctcggatggtttcttcggcgaagactgctccttcgaggtctgccct
gtggactgtggagcaaacggccagtgcgttcgaggtgtttgcatctgctcggatggtttc
ttcggcgaagactgctccttcgaggtctgccctgtggactgtggagcaaacggccagtgc
gttcgaggtgtttgcatctgctcggatggtttcttcggcgaagactgctccttcgaggtc
tgccctgtggactgtggagcaaacggccagtgcgttcgaggtgtttgcatctgctcggat
ggtttcttcggcgaagactgctcgcaaaccaagtgcctcaacaactgcttcggtcgcggc
cactgtgacgacggatactgcgtgtgtgccgaaccctggaccggctccgactgctctgaa
ctcatctgccccaaagactgctacgaccgaggacgctgcaacaacggcacctgctcctgc
gacgaggggttcaccggggaggactgcggagaacgcacctgcaccaacaactgccacggc
aacgggttctgcgtggacggccgctgcgtctgcgccgccggcttcagcggagacgactgc
tctcggctaacctgcctcaacgactgtaacgacagaggcacgtgcttcaacgggatgtgt
atctgcgacatcggctatcaaggcgcagactgcagccagttggcgtgtctgaacaactgc
aacaacagaggccagtgcataaacggacagtgcgcctgcgatgtcggcttccagggagac
gattgcgccgagctttcctgcccgaacgactgccgccacagggggcgctgtgtcaacggc
cagtgcgtgtgcgaggagggctttgtcggagaggactgcagcatcaagacctgctattcc
aactgctacgggcgtggagagtgcattgatggactttgcgtgtgtcatgtaggcttcacc
ggcgagggctgcggcgagctgagctgcccaaacaactgcagaaaccgtggccgatgcgtc
gacgggcagtgtgtctgcgacgagggcttctccggagaggactgtggtcagaaggcgtgc
cccaatgactgcttggcccgaggacgctgcgtcgacggcaaatgcgtctgtcgggaaggc
ttctccggagacgactgctcggtgcacgcctgtccgggtaactgcaacaacagggggcgc
tgcgtcgacgggaagtgtgagtgtgagggtggatacggaggggaaagctgcgctgagctg
agctgcctcaacgactgccaggacaaaggccgctgcgtcgacggtcggtgcgtctgcgag
gaaggatacatcggagacgactgctcagaagtgtctcctccaaaggacctgactgttggc
gacgtcacctctgacacggtggacctgtcctggaacaacgagatgctggtgacggagtac
ttcgtgacgtacgtgcccaccagtcctggaggacttcaaatggagttcaccgtgactgga
gacaagacggcggctaccgtcaaagagctcgaacccggcctcgagtacctcatcagtgta
tacgctgttctgagcaacaagaagagcgtccccatcagcgccagggtggccacggagttt
ccaaagccagagggtttaatattcaaagcagtgagagagacctcggtggaggtgatgtgg
gaccagctggacatctcctttgatggctgggagatctatttccgcaacatgaaagaagaa
aatggaaaagtcgtcagcagccttccaccttctcaaaaccattttgtccagtccggcctc
ggacctggtcaggagtacgaagtctccattaacatcatcaagaacaacaccagaggaccc
caaacatcccaaaaagtcaccaccaagattgacggcccccggcaggtggaggtgaaggac
atgacggactccaccgctctggtcggctggtctcagccggtggctccaacggacagactc
accatgttttactggccgagctccgacccctctgatgaaaccagggtggagatttcccct
ccggacaagcagcacaacatcgacggtctgaggccggacaccgagtacacggtgtcgctc
gtctccgtgcgtggagagctcgccagtgacccggccaccaccacgttcactacagccctg
gacgcccccgtggacctgctggccgtgtccgcgacggacgacagcatcactctggagtgg
accaacggtcaggctgatgttggtagctatctggttaaatacacccccatctctggagcg
actcacggagaggagcttatcccacgaggacccggagacaccacaaaaactaccatcact
gggctaaacccggggacagagtatgggatcggtgtgactgctgtgaagaacgagagagag
agcatccctgctactacaaacgctgcaaccgatatcgatcctcccagagattttaaagaa
accgagtccacagagacttccctcagcttgaggtggcagaaacctcgggccaaggtcggc
gcctacaggctggtgtacgtctccaaggacggccaggccggggaggcggagatcccgccc
gctgcgaccagctacgtcttgtccaacctgactcccggaatgagctacaacatcactttg
actgcggagaggggcctcaagaggagcacacctgtcatgttatctgcatccacagaggag
ctgaagcccatggtggtgaacctcaccacctctgacattacatgggacggcttcactgcg
tcctggagccccatcggtggggagtttgacagctttgtcattgaggtaacaaacctggag
aatttcgaggagagccagaacctcagtctgtccggagacgctctcagcctgggcctctcc
gggctcaaccccaacaccagctacatggttgggctgtttgggatgtatcagggctccttc
cttgaacccgtgtacattgaagccaccacagaggctgagtcggaggtggagcatctcttt
gtgtcggacatcacggccgacggtttccgtctgtcgtggacggccgacgaagacttgttt
gacagattcgtcatcaaaataagagacggcaaaagattagcccaccctcaggagtacagc
gtccgcggcgctgatcggaccaaggtcttaacgggactcatgagcggcaccgagtatgaa
atcgagctttatggcgtctcgttggaccaacgctcccaacctattactggggtcgctcag
acaggtctgagcactccaagaggacttagcttcaccgaggtgacggagtcctcagctgtg
gttcactggtccatgcctcgctctccagtggataactaccgcatcacctacctgcccttt
gaaggaggaagcccactgatggtgacggttgatggcgacgtgtttgaggctttgctgccc
gacatgattcctggaaaaatgtaccaagtgactgtgagcgctgtgaagggtctggaggaa
agcgaccccagcactgacaccgtgatcacagctctggacagacctcaggctctgactcca
gctaatgtcacccacacctccgccctgctggtgtggcagccgtctgtggccactgttgat
ggctacgtcatcacttacagcgctgattcagtgtcccacatggtggagcacgtttctggg
aacacggtggagtttgagatgggctccttggctccaggaacccactacactgttggagtt
catgctacgaaggaagctcagaggagtgactctgctgttactgaattcaccaccgatgtg
gatcctcctcgtgatctgacggctgtaaacattcagactgacagtgcgactctcacgtgg
aaacctccgcaggctgctgtgaccggttacacgctcaccttctcctcagctgatggttca
atcagggaggtggtgctcagcccgacggcgtcctcttacagcatggctcagctgaccggc
tccacagagtacaacgtcaaactccaggccatcgctggagcacagaggagtcgtcacgtg
accaccgtcttcaccaccatcggacagctgtacagacgccctaaagactgcgctcagact
ctactgaacggagagacgacctctggactctaccccgtctacgtgggaggagaggagagc
cagcccatccaggtttactgcgacatgaccacggacggcggaggatggacggttttcctc
agacgccagaatggaaagttgaatttctataggaattggaagaactacaccgctggcttc
ggtaacttgaatgatgagttctggctgggtctctccaacctccataaaatcacgaattct
ggccattatgagatgcgagtggacctgagggacggcggggaattggtctacgctcagtac
gataagctcaccattgcagagccaagaacgcgctataaaatctacttaggggcgtatagt
ggaaccgcaggcgactccatgacgtaccaccagggccgacccttctccaccttcgacaac
gataacgatatcgccgtcactaactgcgccttgtcgtacaaaggtgccttttggtataaa
aactgtcatcgtgtcaacctcatgggaaaatatggcgacaacagtcacagtaaggggatc
aactggttccactggaagggccacgaacactcaattgaatttgcagagatgaagctaagg
ccggccaacttcagaaatttcgagggcagaaaaaagcgatcgtag
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integrated database retrieval system
