Anoplopoma fimbria (sablefish): 129102118
Help
Entry
129102118 CDS
T09102
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129102118
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129102118
Spliceosome [BR:
afb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
129102118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
R3H
HA2_C
Helicase_C
OB_NTP_bind
DEAD
HA2_N
AAA_19
Ank_2
nSTAND3
Ank_4
AAA_22
ATPase
Ank
Ank_5
AAA_23
PhoH
AAA_7
AAA_16
SRP54
AAA_30
Ank_3
T2SSE
Sigma54_activat
AAA_25
Motif
Other DBs
NCBI-GeneID:
129102118
NCBI-ProteinID:
XP_054468075
LinkDB
All DBs
Position
14:9677613..9711069
Genome browser
AA seq
1443 aa
AA seq
DB search
MYLRCWRYPAPLPAERSSCDRHPLTLFSPRQAIIDIPNSLCIMSSAGPASQKPAKSHNTR
HHGSISKGRKEILIDEEIKISMNLSLERFHYSDQKEMEFPSSLSSTERAFIHRMAQSLGY
ISKSKGKGPNRFLTIRKKNGSDKPRPTMPLTVSHNSLYFIRSLLQRFPISNKERIDMQPN
NKSGMSVSAEPDSSCERNRASGRLNNGIPMVPRRRSPSDLDNFRRSLPVHERQEEIIQLI
RENRVVLVVGETGSGKTTQIPQFLLDESSRNGDPCRIFCTQPRRLAAISVAERVAAERGE
SVGQTVGYHIRLESRVSPKTLLTFCTSGVLLRTLMAGDASLTTVTHVIVDEVHERDGLTD
FLLTKLRDVLQKIPTLKLILSSAALDIDMFLQYFGSCPVIHLIGRQFEVKEFFLEDILTL
TGFNNKDIKKYKEETQRKEKKQKCLTEWCKAVEEEKQRTPVSAPGFLQDSSSLDRGDGTF
NKPTENDMEQLEPWLLKEMDSCISNIFLNEDQDAFIQLFNLILYESVNVDYRHSDTGASP
LMVAAARGFLTQMEQLLSMGADINMKASNGWTALDFAQHFQQTDATDLLKSSIPLGEVSS
LDESTLMQCGSAELSTEEQELLKLYHHSFDDERVDLDLIMDLLHNICSTTSDGAVLIFLP
GYDEIVSLRDRILYDDKRFSTHSERYQVFTLHSDMQTLDQKRAMKTSPPGIRKIILSTNI
AETSITINDVIFVIDSGKVKEKSFDTLSHVSMLKTVWISKASALQRKGRAGRCRPGISFR
LFSRLRFNNMLEFQVPQLLRMPLQELCLQTKLLAPSSCPVAEFLSKAPQPPSAHAIKNAV
QMLKTIDAMDQNEDLTDLGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPF
ILPAQGAQKRAALHNRKCFTSTSFSDHMALLRAFQAWQKARSEGWERSFCEKNFLSQATM
DMILGMRTQLLGQLRAIGFVRARGGSDIRDVNLNSENWAVVKAALVAGMYPNLVHINQET
SLLSSNREKKVHFHPTSILSQSQLKENSQAKSAQALPTDWLIYDEMSRGHRMASVRCCSM
MTAITVAVFGGCAKLPSSALQEPAAQRATDSPPDDISDSETEDMAELRIDDWLVFQLDRE
AAGLVFELRQKWQNLFIKRIRCPSKPWSQQDEAIIRTLVSVLAAEEQGAGLQQPTGIGQR
PRPMSSEDGPQASAKSSKNSPQLPTNTNYDKSRRMPAAWSLLQGKAQHREEASLPIKQLC
EEPHSSSSSSCSVTLDSPSYSPCPSSSGKPISKPPSPQLLFSSARYFIMKSSNVRNIDIS
QQRGIWSTTPSNENKLTKAFLEKNAIILIFSVQGSGHFQGYARMTSAISQESCQDWGFMG
LGGVFSVEWIHKESLPFQCSQHILNPWNDNKKVQISRDGQELEPQAGSQLLLLWERNSGG
QVQ
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atgtaccttcgttgttggcggtacccggcaccattgccggcggaacggagcagctgtgat
cgccaccctttgaccctcttcagtccgagacaggccattattgatattcctaacagtctg
tgcatcatgtccagtgctggcccagcatcacagaaaccagccaagagccataacacacgg
caccatggctccatctccaaaggtcgcaaagaaattctcatcgatgaagaaatcaagata
tcgatgaacctctctctggagaggtttcactacagtgaccaaaaagagatggaatttccg
tcctccttgtccagtactgagagagcttttattcatcggatggcacagtccctgggttac
atttctaagagcaaaggaaaaggaccaaatcgcttcctcaccatcaggaagaagaacggt
tcagacaaaccccggcctactatgcccctcacagtctcccacaattccttatatttcatc
cgcagcctacttcagaggtttcccatcagcaataaggaacgcatagacatgcagcccaac
aacaaaagtggcatgtctgttagtgcagaacctgacagcagttgtgagaggaacagggca
agcgggcgcttaaacaacggcatacccatggtgccccggagacggagcccatcagacctg
gacaatttccgacgctccctgccggtgcatgaacgccaggaggagatcatccagctcatc
agagaaaacagggttgtgttggtggttggagagactggctctggaaaaactacacagatc
ccacagttcttgctggatgagagcagccggaatggagatccctgcaggatcttctgcact
cagcccagacgactggctgccatctctgtggctgagagagtggcagcagagagaggagag
agtgtgggccagactgtcgggtatcacatcagactagagagcagggtctcgcctaagaca
ctgctgaccttttgtaccagtggagtgctcctcaggacgttgatggctggagatgccagc
ctgacaactgtcacacatgtcattgtggatgaggtgcatgagcgtgatggtctgactgac
ttcctgctcaccaagctgcgggacgtgcttcagaagattcccacactgaaactgatcctg
tccagtgcagctctggatatagacatgttccttcagtactttggctcctgccctgttatc
cacctcataggaaggcagttcgaagtgaaggaattctttcttgaagacattctgacgctg
acgggctttaacaataaggacattaagaaatacaaagaagagacacagagaaaggagaag
aagcagaaatgtttgacagagtggtgtaaggcagtagaggaggagaaacagaggacccct
gtgtctgctccaggcttcctccaggacagcagctccctggacagaggggacggcaccttc
aacaagccgactgagaatgacatggaacagctggagccgtggctgctgaaggagatggac
tcatgcatttccaacattttcctcaatgaagaccaggatgctttcattcagctcttcaac
ctcatcctctatgaaagtgtgaacgtggactacaggcacagtgacacaggggcctcacct
ctgatggtggcagcagctcgagggttcctcacacagatggagcagctgctcagcatgggg
gcagacatcaacatgaaggcatcaaatggctggacagccctagactttgcccaacacttt
cagcagacagatgctacggatctactcaaatcttccattcctctgggagaggtgagtagc
cttgatgagtccactctgatgcagtgtggcagtgcagaactgagcactgaggagcaggag
ctgctcaaactgtaccaccacagctttgacgatgagcgggtggacctggacctcatcatg
gatctgctgcacaacatctgctccaccaccagtgacggtgctgtcctgatttttcttcct
ggatacgatgagatagtatcactcagggaccgcatcctgtatgacgataagagattctcc
acccactctgaaaggtaccaggtgttcactctacattcagatatgcagaccttggatcag
aagagagccatgaagacctctccacctggtatcaggaaaataattctttctactaacatt
gctgagacgagcatcactatcaacgatgtgatcttcgtcattgattcaggaaaggttaaa
gagaagtcttttgataccctcagtcatgtctccatgttgaagacggtttggatctctaaa
gccagcgctttgcaaaggaagggaagagccggccgctgcagaccggggataagcttccgc
ctcttcagtcgactaaggttcaacaacatgctagaattccaggttccacagctgctgcgg
atgccactgcaggagctgtgtctgcagaccaaactgctggccccctcctcctgtccagta
gctgagttcttgtccaaagctccacagcctccttctgcacatgccattaagaacgctgtg
cagatgctgaagacaatagatgctatggaccagaatgaagacctgactgatctgggctac
cacctggcggacctccccgtcgagccccacttgggcaagatggtgctgtgcgccgtggtg
ctgaagtgtctggaccccattctaaccattgcctgtacactggcctatcgggacccgttc
atccttcccgcccagggggctcagaaaagagcggcactacacaaccgcaaatgtttcact
tccacctccttcagcgaccacatggccctgctgagagctttccaggcatggcagaaggcc
cgcagtgaaggctgggagagatccttctgtgagaagaacttcctgtcccaggccaccatg
gacatgatactgggaatgaggacacagctgctgggacagctccgagccattggtttcgtg
cgagcccgtgggggcagtgacatcagggatgtgaatctgaactctgagaactgggccgtg
gtgaaggcagccctggtggctggcatgtatccaaacctggtccatatcaaccaggagacc
tccctgctctccagtaacagggagaagaaggtccactttcatcccacatctatcttgagc
cagtcccagttaaaggagaacagccaagctaaatcggcccaggcccttcccacagactgg
ttgatctacgacgagatgagccgaggccacaggatggccagtgtccgctgttgctccatg
atgactgccatcaccgtggccgtatttggagggtgtgccaaactacccagctctgctctg
caggaacctgctgcacagagagctactgacagtccgccagatgacatcagtgacagtgag
acagaggacatggctgagctgaggatagatgactggctcgtctttcaattggacagagag
gctgcaggactggtgtttgaactgaggcagaagtggcaaaatttgttcatcaagaggatc
cgttgtccttcaaagccctggtctcaacaagacgaggccatcatccgaaccctggtttct
gtgcttgcggcagaggagcagggagcaggcctgcagcagcccacagggattggccagagg
ccccggcccatgtcgtcggaggacgggccccaggcttcagcgaagagctccaagaatagc
ccccaactacccaccaacaccaactatgacaagtctcgtaggatgcctgcagcctggagc
cttctacaggggaaagcccagcacagagaggaggcctcactgcccatcaagcagctctgt
gaggagcctcactcctccagcagctcatcctgctctgtgaccttggacagtccctcttac
agcccctgtccttcctcctcaggaaagccgatctcaaagccaccatcacctcagctgctc
ttctcttcagcgcggtacttcatcatgaagagcagcaacgtgaggaacatagacatttct
cagcagagaggtatctggtcgaccacaccaagcaatgagaacaaactaacaaaggccttc
ctggagaagaacgctatcatcctcatcttctctgttcagggctctggacacttccagggc
tacgcccgcatgacatcagccatcagtcaggagagctgccaggactggggcttcatggga
ctcggaggggttttcagtgtagagtggatccacaaggagagtctccccttccagtgctcc
caacacatcctcaacccttggaacgacaacaagaaggtccagatcagcagggacggacag
gagttggagccccaagcaggcagccagctgttgttactgtgggagagaaactctgggggt
caagttcaataa
DBGET
integrated database retrieval system
