Anoplopoma fimbria (sablefish): 129102127
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Entry
129102127 CDS
T09102
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afb03021
]
129102127 (chd1)
03036 Chromosome and associated proteins [BR:
afb03036
]
129102127 (chd1)
Transcription machinery [BR:
afb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
129102127 (chd1)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
129102127 (chd1)
SLIK complex
129102127 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
129102127
NCBI-ProteinID:
XP_054468094
LinkDB
All DBs
Position
14:complement(10048178..10070722)
Genome browser
AA seq
1808 aa
AA seq
DB search
MAGRSEDESVSNSSGESSNSDDESGSGSGSASGSVSGSSSSSSSSSSRSGSSGSGSGSGS
GSQSDSDTEKSKEKMEPPNKSNIDGAEFWKSNPSILAVQRSAMLRKQQQQQQQQQQQKRQ
SSSNSGSDEDSSSSDGSDSSSGSKRRRNSASSVSGSGSGSGSGSGSDSSAEDKSEETASD
YEPSHKIKSRKPPTKMNYRNGKKSSNQKKKSGKCSSSEDEDDNYKKAASAGQRRQATVNV
SYKEDEELKTDSDDLVEVLGEDVPQPEEDEFETLEKVMESRIGRKRATGSVTTVYAVEAD
GDPNTNFNANKEPGEIQYLIKWKNWAHIHNTWETEETLKLQNVKGMKKLENFKKKDQEKK
RWLKAASPEDIEYFNCQEELMDDLHSQYQIVERIIGHSNQKSAAGYPDYLCKWQGLPYSE
CSWEDGALIGRKFQKCIDDYMTRNQSKSIPSRDCKVLKQRPRFIPMKKQPLYIGGDGLEL
RDYQLDSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYMLNDHQLYGPFLLVVPLST
LTSWQREILLWAPQINVVVYLGDISSRNMIRTHEWIHVHSKRLKFNILLTTYEILLKDKS
FLGNVNWAFIGVDEAHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIM
PEKFHSWELFEEAHGKGRDSGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAI
QKQYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNEFLTRAEALQ
QLIRSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLKSRQFLFQRLDGSIKGE
MRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI
GQKRQVNIYRLVTKSSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSAPFN
KEELSSILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKV
ANFSMMDEEEIDIDSERSHRSWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQIS
FNASSGRQSRNRRYSGSDSDSPSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFVKSYKKF
GGPLERLDAIARDAELVDKSEHDLKRLAETVHNGCVRTLRENPCGPEKTSGGRRGKVKGP
TFRISGVQVNAKLVISHEEELAPLHKAIPADPEERKKYMIPCHSKAAHFDIEWGKEDDSS
LLIGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKR
EAQKQAGTANSRKRKPRSKKNKTLKPSKVDEVLKSTSSDPPSDKRSDDEDEIEEEKEMVP
LKAPGRRSRADRVVVVKEEEEDEDDEDEEPEQEDVSSSGEREVIEKEIKKESKKEKKEDS
WDIKETKEQKEKKETKPLEAVHKQEESMEKIEVKTEVRERTKKASDVQVHITASGENVPV
SEESEELDQRTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECL
KEYSNPDQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAMEQNTRSINAHG
YKHADIERLKDNSHQDDSSRDSYSSDRHPPSGRFHESSSSKERHGSESHRKTTAGESRKR
PYSSFSNGKDHRDRDRDHYRPDSRDRDRDRDRQDRYYNDSKHRKLEEFRSSRDHRLDAKD
HSHSEHRSSYRYHSDWQNEQRASASGPRSPRDQRSPYDSRSPMGHRSPFDYSSDHKSTPE
QIWSSRKT
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgcagtgaggatgaaagtgtaagcaacagcagtggagaatcaagtaattct
gatgatgaatccggttctggatcgggctcggcgtcaggctctgtctcaggctccagttcc
agctcctccagcagcagcagccgatcagggagcagtggctcagggagtggctcaggctcc
ggcagccagtcagattctgacacagagaaatccaaggagaagatggaaccgccaaataag
tcaaacattgatggagctgagttctggaagtccaacccaagtatcctagcagtgcaaaga
tctgcaatgctcagaaaacagcagcagcagcagcagcagcagcagcagcagaagagacaa
agctcctcgaatagtggatctgatgaggactcgtcaagtagcgatggatctgactcttca
agtggatccaagaggagaagaaattcagcctcctctgtctctgggtcgggttctggatct
gggagtggttctggatcagactcatcagcggaggacaagagtgaagaaacggcatcagac
tatgagcccagtcacaaaatcaaaagcagaaagcctccaacaaagatgaattatcggaat
gggaaaaaaagcagcaaccagaagaagaaatccgggaagtgttcttcctctgaggacgag
gatgataactacaagaaggcagcgtctgcggggcaacggcggcaagccacagtcaacgtc
agctacaaagaggacgaggagctgaagactgattcagacgacctggtggaagttctgggt
gaagatgtcccgcaacctgaggaagacgagtttgaaacactggaaaaagtgatggaaagc
aggataggaaggaaaagagcaacaggaagtgtaaccactgtatacgctgtagaagcagac
ggggaccccaataccaacttcaatgccaacaaagagcctggtgagatccagtacttgata
aagtggaagaactgggcccacatccacaacacttgggagacagaagagacactcaagtta
cagaacgtcaagggcatgaagaaactggaaaatttcaagaagaaggaccaggagaaaaag
agatggctaaaggcagcttcgccagaggatatagagtacttcaattgtcaggaggaattg
atggatgaccttcactctcagtaccagattgtagagcgaatcataggacattcaaaccag
aagtcagcggctggttacccagactacctgtgcaagtggcagggtttaccgtactccgag
tgtagctgggaagacggcgctctgatcggcagaaagttccagaaatgtattgacgactac
atgaccagaaaccagtccaagtccattccatccagagattgcaaggtgctcaaacagaga
cccaggtttatacctatgaagaagcagccactttacataggaggtgatggactggagctc
cgagactaccagttggacagtttgaactggatggcccactcctggtgcaaaggcaatagt
tgcatccttgctgatgagatgggtttagggaagaccatccagacaatctccttcctcaac
tacatgttaaacgatcaccaactgtatggacccttcttgctggttgtgcctctctctaca
cttacctcctggcagagagaaatcctgctctgggcccctcagataaatgttgtggtctat
ctgggagacatcagcagcaggaatatgatcaggacacatgagtggatccatgtccatagc
aagaggctgaaatttaacatccttctcacaacatatgagattcttctcaaagacaagtca
tttttgggcaatgttaactgggccttcattggtgtggatgaggcgcaccgactgaagaat
gacgactccctcctctacaaaaccatgatggacttcaagtccaatcacaggcttctgatc
acaggaacgccactgcagaactccctgaaagagctctggtccctgctgcacttcattatg
cccgagaagtttcactcttgggagctgtttgaggaggcgcacggtaaaggcagggattcg
ggctacgccagtctgcacaaagagctcgaaccatttttactgcgccgagtcaagaaggat
gtggagaaatctcttcctgccaaagtggaacagatcctccgagtggagatgagtgctatc
cagaaacagtattacaaatggatcctgaccaggaactataaggctctgagcaaaggtacc
aaaggcagcacgtcgggcttcctgaacatcatgatggagctgaagaagtgttgtaaccac
tgttaccttatcaagcctccagaggacaacgagttcctcaccagagctgaagccctacag
caactgatccgcagcagtgggaagctggttctgttggacaaactgctggtgcgtttgaag
gagcgaggccacagagtcctcatcttctcccagatggtacggatgctggatatcctggct
gattacctgaagagccgacagttcctctttcagagattggatggttccatcaaaggggag
atgaggaagcaggcgttggatcattttaatgctgagggctcagaggatttttgcttcttg
ttatcaacgcgtgccggtggtctgggtatcaatctggcatcagctgacacagtagtcatc
tttgactcggactggaacccccagaatgatctccaggcccaggccagagcccacaggatt
ggacagaaaagacaggtgaatatctaccgtctggtgacgaagagctcagtggaggaggaa
atcattgagagggcgaagaagaaaatggttctggatcaccttgtcatccagaggatggac
actacagggaaaactgtcctgcataccggtgctgctccctccagttcagcaccattcaac
aaggaggagctgtcttccatcctgaagtttggtgctgaagagcttttcaaagagccagag
ggtgaggagcaggaacctcaggaaatggacatcgacgagatcctcaaaagagctgagacc
agggaaaatgatcctggaccctccactgtgggagaagaactgctgtctcagttcaaggtg
gccaacttctccatgatggacgaggaggaaatagacatagactctgagcgtagtcaccgg
agttgggacgacatcattcctgaggaacaaaggaggaggatggaggaggaggagagacag
aaggaactagaggagatctacttgctgccacgcatgaggaattgtgccaaacagataagc
tttaacgccagttcaggccggcagagcaggaacaggcggtactctgggtctgacagtgac
tccccctcagaccggaaaaggccaaagaaacgagggcgacctcggaccattccacgagaa
aatatcaagggcttcagcgatgctgagatccggaggtttgtcaagagttacaaaaaattt
ggaggaccactggaaaggttggatgctattgctcgtgatgctgaacttgtggataagtct
gaacatgatctgaaacgcttagcagagaccgttcacaatggctgtgtgagaacgctgcga
gaaaacccatgtggaccagagaagacttcaggaggcagaagggggaaggtgaagggccct
acattcaggatctctggagtccaggtgaatgccaagctcgttatctcccacgaggaagag
ttggctccactccacaaggccattcctgctgaccccgaggagagaaagaagtatatgatt
ccatgccactcaaaggcagcacactttgacattgagtgggggaaggaggacgactccagc
ctcctcataggaatctatgagtacggctacggcagctgggagatgatcaagatggatccg
gacctcaatctcacacacaagctccttccagacgaccctgacaagaagccacaggccaaa
cagctccagaccagagccgactacctcatcaagttgctaagcaaggacctggccaaaaga
gaagcacagaaacaagcagggacagctaattcacggaagaggaaaccgagaagtaaaaag
aacaaaactctgaagccaagtaaggttgacgaggtgctgaagagcacgtcctcagatccc
ccatcggacaagaggtcagacgatgaggacgaaattgaggaggaaaaggagatggtacca
ctgaaggcacctggcagacggagccgagcagacagggtggtggtggtgaaggaggaggaa
gaggacgaggacgacgaggatgaggagcctgaacaggaggatgtttcttcatcaggggag
agggaggtcatagaaaaagaaataaaaaaagagagcaaaaaggagaagaaggaggacagt
tgggacattaaagagacaaaggagcaaaaagagaaaaaagaaacaaagcctctggaagcg
gtacataaacaggaggagagcatggaaaagatcgaagtaaagactgaggtacgagaacga
acgaagaaagcctccgatgtgcaggtccatattacagcaagtggggagaatgtgccagta
tctgaggagtctgaggaactggaccagaggaccttcagtgtgtgtaaagagaggatgcgg
ccagtgaaagcggccctgaagcagctcgaccgaccggagaaagggctgtcggagcgcgag
cagcttgaacatacaagacagtgcctcattaagatcggagaccacatcacggagtgtctg
aaggagtactccaatcctgaccagatcaagcagtggagaaaaaacctgtggatattcgtt
tccaaattcactgagtttgacgccaggaaactacataaactgtataagcacgcaatcaag
aaacgacaagagaatgcccaggcgatggagcagaacactagaagcataaatgcccacggc
tataagcatgcagatatagaaaggctgaaggacaactcacaccaggacgacagcagcagg
gacagctacagctcagacaggcatccgccgtcgggtcgattccacgagagcagcagcagt
aaagagaggcacgggtccgagtcccaccggaaaaccacagcaggggagtccaggaaaagg
ccgtactcatccttcagcaacggcaaagaccacagagacagagaccgagaccactacaga
ccagacagcagggacagagacagagacagagacagacaggacagatactataacgacagt
aagcacaggaagctggaggagttccgctccagcagagaccaccggctggacgccaaggac
cactcccactcggagcaccgctcttcctaccgctaccactccgactggcagaacgagcag
cgggcgtcggccagtgggccccgctccccccgggaccagcgctcgccctacgactcccgc
tcgcccatgggccaccgctcgcctttcgactactcgtcggaccacaagagcacaccggag
cagatctggagcagccgcaagacataa
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integrated database retrieval system
