Anoplopoma fimbria (sablefish): 129102145
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Entry
129102145 CDS
T09102
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
afb03009
]
129102145 (ddx56)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129102145 (ddx56)
Ribosome biogenesis [BR:
afb03009
]
Eukaryotic type
Pre-60S particles
Helicases
129102145 (ddx56)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
129102145
NCBI-ProteinID:
XP_054468117
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Position
14:complement(1689239..1698397)
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AA seq
562 aa
AA seq
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MAADRLQFHEMGLDDRLLKAVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAY
AVPVIQRILASKQSVREQDVRALILVPTKELGQQVQNMIRQLTAFCSRDVRVADITGKAD
LSAQRPILMEKPDVVVGTPSRVLAHLTAQNLVLNSSLETLVVDEADLLFSFGFEADLKSL
LCHLPKIYQSFLMSATFTEDVQALKELLLHNPVILKLQGSQLPDSSQLQQYSIKCEEEDK
FLLVYTLLKLRLVQGKTLVFVGAVDRSYRLKLFLEQFGIPACVLNSELPVQSRCHIITQF
NQGFYDYIIATDEESLADPTAAAQAAAGKGKKKKKNSERGGGKKDKEYGVARGVDFQNIA
NVINFDFPTTVESYIHRVGRTARADNPGTALSFTSHTELELLLEVEEALTGDNADSGLKP
YEFKMEEIEGFRYRCRDAMRSVTKQAVREARLKEIKQELLNSEKLKTYFEDNPRDLQLLR
HDKDLHPAVIKPHLRNVPEYLIPETLKGAVNPLSSRRKKKKLKPKPDGVVKTSFKKNIQG
KNPLKSFRYSGTRNRKGKAGQS
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgacagactccagttccatgaaatgggtttagacgaccgtctcctgaaggcg
gttgcagatctgggttggtcccagccgaccctgatccaggagaaggcgatccctctggcc
ctggaggggaaagacctgctggctcgagctcggaccggatcagggaagaccgccgcctac
gctgtccccgtcatccagcgcatcctcgcctccaaacagagcgttcgtgagcaggatgtg
agagctctgatcctggtcccgaccaaagaactgggtcagcaggtccagaacatgatcaga
cagttaacggcgttctgctccagagacgtccgagtggccgacatcaccgggaaggccgac
ctgtctgcacagaggcccatcctgatggagaagcctgacgtggtcgtggggacgccgtcc
cgtgtgctggcccacctcaccgctcagaacctggtcctgaattcgtctctggagaccctg
gtggtggacgaggccgacctgctcttctcttttggcttcgaggccgacctgaagagtctg
ttgtgtcatctaccgaagatctaccagtcgttcctgatgtcggctacgttcaccgaggac
gtccaggccttaaaggagctgctgctgcacaacccggtgatcctgaagctccagggctct
cagctgcccgacagcagccagctgcagcagtacagcatcaagtgtgaggaggaggacaag
ttcctgctggtctacacgctgctgaagctgcgtctggttcaggggaagacgctggtgttt
gtgggcgccgtggaccggagctacagactcaaactgttcctggagcagtttgggatcccc
gcctgcgtgctcaactctgagctgcccgtccagtccaggtgtcacatcatcactcagttc
aaccagggtttctatgactacatcatcgccacagatgaagagagtctggctgatcccaca
gctgctgctcaggcagcggccggcaaagggaagaagaagaagaagaactctgagagagga
ggaggaaagaaggacaaagagtacggagtcgccagaggtgtcgacttccaaaacattgcc
aatgtcatcaactttgatttccccacaactgttgagtcgtacatccaccgagtcggaaga
acggcgagagcagacaaccccggcaccgctctgtccttcacctctcacactgagctggag
ctgctgttagaggtggaggaggcgctcacaggagataacgctgactctggtctgaaacct
tacgagttcaagatggaggagatcgaaggcttcaggtacagatgtagggacgccatgcgt
tcagtgacgaagcaggcggtgagagaggccagactgaaggagatcaaacaggagctgctc
aactccgagaaactcaagacgtatttcgaggacaaccccagagacctgcagctgctccga
cacgacaaagacctccatccagccgtcatcaagcctcacctgaggaacgtccccgagtac
ctcattcctgagacgctgaagggcgccgtgaatccgctgtcgagccggaggaagaagaag
aagctcaaaccaaaaccagacggagtcgtcaagaccagtttcaagaagaacatccagggg
aagaaccctctgaagagtttccgatacagcggaacgaggaaccggaaaggaaaagccggc
cagtcataa
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