KEGG   Anoplopoma fimbria (sablefish): 129102713
Entry
129102713         CDS       T09102                                 
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:afb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129102713 (prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:afb03041]
    129102713 (prpf4)
Spliceosome [BR:afb03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    129102713 (prpf4)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40 Beta-prop_THOC3 WD40_CDC20-Fz WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_EML_2 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_Aladin Beta-prop_EML PRP4 WDR90_beta-prop_4th NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_Vps41 WD_LRWD1 Beta-prop_IFT140_1st eIF2A Beta-prop_WDR11_1st Beta-prop_WDR19_1st WD40_like Beta-prop_Nup120_160 Tricorn_2nd DUF7779
Other DBs
NCBI-GeneID: 129102713
NCBI-ProteinID: XP_054468944
LinkDB
Position
14:complement(833357..840077)
AA seq 506 aa
MSDDEDSAPVTKRTRLYYGSLEEKERERLSSDRGKGSDGVKAGIKAGNINISSGETLDLE
DRGSERQQDALAAFEQRRRARQIHVSTDDAEVKAGLRALGEPIILFGEGPADRRERLRGV
LSVVGPDALKKSKREEEKAKRSQDECQQTWYHEGSASLKDARLWLAKYSLPRTMKRLEAA
RAYREIPEATRAIRQQELQNSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWSGLCK
LWSVPDCSLIRTLRGHSTNVGAIVFRPQVGISLDQADVSLASCATDGTVKLWNLESDEPV
ADIEGHSDRVSRVSWHPSGRFLGTASYDNSWRLWDLEVQEEILHQEGHSKGVHDIHFHPD
GSLAATGGLDAFGRVWDLRTGRCIVFLEGHLREIYSVHFSPNGYHLATGSGDNTCKVWEL
RTRKCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNMAKVWSHPGWTPLKTLAGHEGKVM
GVDVSPDGKLIATSSYDRTFKLWLSE
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgtcggacgatgaggactcagctccggtcacgaagaggactcggctgtactacggaagc
ctggaggagaaggagcgcgagcgtctgagctccgatagggggaaaggcagcgatggggtg
aaggccggcatcaaggcgggaaacatcaacatctcgtcaggagagactctggacctggag
gaccgcggcagcgagcggcagcaggacgcgttggctgcgttcgagcagcggcggcgcgcg
cgacagatccacgtgtccacggacgacgccgaggtgaaggccggcctccgagcgctggga
gagccaatcatcttgttcggagagggaccagctgaccgccgcgagagactgcgcggtgtt
ctgtctgttgtcggtccggacgctctgaagaagtccaagagagaggaagagaaagccaag
agatcacaggacgagtgtcagcagacgtggtaccacgaaggctccgcctccctgaaggac
gctcgcctctggttggccaaatactctctgccacggacgatgaagcgtctggaggctgca
cgcgcttacagggaaattcccgaggcgacgagggcgatacgacaacaagagctgcaaaac
agtctgaggaatctgaacaacttctgcagtcagatcggtgacgatcgaccaatcagcttc
tgccacttcagccccgactccaagatgctggccaccgcctcctggagtggcctgtgtaag
ctgtggtccgtcccagactgcagtctgattcgtacactcagaggacacagcaccaacgtc
ggtgcgatcgtcttccgaccacaggtcggaatctctctcgaccaagcagacgtcagcttg
gcctcgtgtgccaccgacgggactgtgaagctgtggaacctggagagcgacgagccggtg
gcagacatcgagggtcacagcgatcgagtgtctcgggtgtcgtggcatccctctgggagg
tttctgggaacagccagttatgataactcgtggcgtctgtgggacctggaggttcaggag
gaaatcctccatcaggaaggtcacagtaaaggagtccacgacatccacttccacccggac
gggtcactggctgctactggaggcctggatgctttcggtagagtctgggaccttcggacc
ggacgctgcatcgttttcctggagggacacctgagggagatctacagcgttcacttctct
cccaacgggtatcacctggcgacaggaagtggtgataacacctgtaaggtttgggagctt
agaaccaggaagtgtctgtacacagtccccgcccaccagaacctgctgtctgctgtccga
ttccaacccacagacggtcacttcctgttgactggagcttacgacaacatggcgaaggtt
tggagtcacccgggctggacgccgctgaagacgctcgccggacacgaggggaaggtgatg
ggcgtcgacgtgtcacctgacgggaaactgatcgccaccagctcctacgacagaaccttc
aaactctggctgtctgagtga

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