Anoplopoma fimbria (sablefish): 129102819
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Entry
129102819 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4-like
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
afb00535
]
129102819
04091 Lectins [BR:
afb04091
]
129102819
Proteoglycans [BR:
afb00535
]
Cell surface proteoglycans
Others
129102819
Lectins [BR:
afb04091
]
C-Type lectins
Others
129102819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
129102819
NCBI-ProteinID:
XP_054469065
LinkDB
All DBs
Position
14:19489467..19518490
Genome browser
AA seq
2546 aa
AA seq
DB search
MSYMVWEQVPTLYRKDIRNNMRSGGVGGRQTEGGGPGPFRERRKRKENTLVNRNPPPPHS
PPPPTMSFYGDGYIHLRTVEASIQTLLHVRFRTSSQAGILFLAAGRRDFLVLELISGRLQ
VRLDLGSGERSLRSEKGIHLNDLAWHSMELTHDHHNVNMTVDRNSHTSLRMPGPDLELSV
EDGLFVGGTAGLNHPFLLNISAGFRGCVDEVVFNEHNLLSSLRPYSGYKSVHEVSLGCSP
QFSATEEDSVSFFSSKAFITLPPWEGPQEGVFECELFPPARGEDGMVLYSSGNQGGFVAI
EIRDGNMVATVGNGEGSKTELRSLTYVHSNHTWYPIQLHLLPNSIQLKVGEELVKATLSL
ELQVIQLQGPLFLGGLNKEARGEARQAGLLSTVPGGKPAVQGGSFKGCLREIRVNTQRTG
LPHAAITKDITVGCKTRQVPNALTTTSPTDHPEFDVTTTQPITNNKKNTNFLLLSKLEVL
EGGRAPLEPKHIRVNLDFRKLGFHQSQLMFRIEGQPVHGQLRLDLTPDPDGILGERQERT
ITTGAGEVDRTFSMLDLWQGRVIYVHSGSEDQHDFFMFSVFTRNKKAPPVFLKGNRLHQF
DISISPVNDAPVLSLPEGNLFTLLEKSKRQLTTDLLKVWDPDSSPADLVFSSLGNLNTEV
GHLEHQEYLGRAINLFSLNDLEEGKICFVHTGVPTSRLALRVSDGQKLSNTVVLRIIAMP
LEHKLVNNTGLEVNQGGASIITATHLAVQVNVNDQAVEIRYDVTELPQYGVLQRLHSSGD
WKPTSSFSQKLLQKERIRYLSTYHGVQTQSNITDHFKCRISIDSRATEEVVFPIMVRWIH
FKVTRSKMELNGVQSTAVTHKDLHVISKGVKINESDLYLRLLTVPKKGQLFLDNKTLQRN
STFSQKNITDGLMRYELLNMLQDDTRDTFSFQVFSTHANSTAYDFRINIKAQSTAITLVN
KGLSTLEGGSKVINKDILFTHTSSNREVHYSITVSPRHGQLRRINLSNSTSINDNIVTFT
NQDIIEERIMYVHDDSETKQDSFMFQIMVYKPNKHTSKEDRNTAEHTFNISVQLVNDERP
VRVVDKVFHVARNRQRLVTLNDLRYRDGDSDFEDNWLVYTRRGIPMGELVLSSDTSHKLY
EFTQRDLEQKKVLFVHRGVSFGRFVLFVSDGKHYVSTLMEVMAQDPYLQVENNTGLMVQQ
GGITTLTSANLSIISNLDIRDPQEVTFEVFLPPKHGVLCFIDGDRVTAADAISIFTQRDL
VEGRLVYHHDGSHEFSDGFNVTTRTREKSTVRKMDRERREIQLDIGVMVKIYLESHQRPP
TVICNRPVVVAEGQYVSISKEHLEVVHEDSRPSEIVFIVQSPPSLGFLQRFLRTSMXGIR
EQPTNSFTQEDLNHGLIIYHQQAAGHTNDSVLLGATNGVTSVGPIRLEIDIIPILLPLQV
SDLTLDEGSSLPLTTDIIKMANHHFSGMNFLYQVIVPPQHGHLEHSRIPGMPITAFTHTE
VEREYISYIHDGSETLRDNFTIVANQTEIRKHSLPCAAHINVMPVNDETPVVTTNKGLKV
WVGSMTEITTDDLSAEDSDTPEPEGLEFIVTPPSNGHLALKSTPSRHILNFTQNHIQTGQ
LMFVHSGALSGGFQFQVNDGLNFAPRQIFSTTAHSLVLTLQRNHPMEVYQGSVTPISEQE
LLAVTNDVNAIRRNHSVVFAITDPPKLGRLVHRMPDNSTRNISTFTQSMVTDGVILYDQN
KPQSVGWSAADAFSFTVSSPPALLPPHTFTILISYQANEHHDSPQHKTRLLSNAGAVVAE
GGRVTIDSSKLDASNLLGKVPEPHRKDHHILYRLISLPRHGALSIRGHNLTRNQPDFSQV
TLNKFGITYVHDDSETTSDNFTFRAWVAPLDPFSSSSSSDSLAVTETFNITVTPVNDQPP
LIRSRAPSIKVVVGERVVLGPDNLQVEDHDTPPEELHYLVIKKPNNGYLTLGERPEPVTS
FTQYDVNHGRLHLIQQGEPSIGVFYFNVTDGHHRPLYKLFSLEVIKPSVSMVNNTGLSLL
QGRAAVILTTNQFAAQTNSRMQVNITYTVTTHPRHGRIAINDQEVTTFRHEDVQFGRVVY
HMTDLSESEDSFRVSVSASSPGVHYGNVTAQVNVTVKPLIYLREQVRVPSGIAVKLGKAM
IDASELARISRADPVFQVLSPPKHGKLVKMTYDPNRASEVLKSFTFRDVVQGRVAIEETL
SDSQQHDNKSAFATARGHAPATPLNDSFIFLLKAGNVQPAKGELHFTIFPHHQMHYGPSS
SNTDGASPEQTTNRLPTHNKTTTGRGGGRGGSTTLRGDEVGLPPHILTHKNHSRTQHKLR
SNNRLGNHTRSGSHGGRSGSRAEGGGHSHVPQPHTPSVSIPPVVHPVHVELLPRPASDPL
LIILPLLACLFLIVILVVLILVFRRIKEKKARLRLLQQLAAVTLPTEDSPYMGRAERSVA
MPSVVVTQLGPASCPSSPLRVPLSPRRKSLAPGMTFWGPFEADRAGGDKNIRGGNCVGKD
QVTAGVQTALRSRSPTPTLRDNQYWV
NT seq
7641 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacatggtgtgggaacaggtcccaaccctgtacaggaaagatattaggaacaac
atgagatctgggggagtgggagggagacagactgagggagggggtccggggcctttcagg
gaaaggaggaaacgaaaggagaacaccctcgtcaacagaaaccctccccctccccactct
ccccctcctccaacaatgtcattctacggagatggctacatccacctgcggacagtggag
gcgtccattcagactttgctccatgtgcgttttcgaacctcgagtcaggcaggcatcctg
tttttggcagctggacgcagagacttcttggtgctggagctcatctctgggcgcctgcag
gtccgtctggaccttggctcaggtgagcgctcactacgctcagaaaagggcattcatctt
aacgacctggcgtggcactccatggagctgacccatgaccaccataatgtcaacatgacc
gtggaccgaaactctcacaccagcctccgtatgccaggaccagatctggagctcagtgtt
gaggacgggctttttgttggcgggacagccggactgaaccacccattccttctcaacatc
tccgctgggtttcgaggctgtgtagatgaagttgtgttcaatgaacataacctgttgtcc
agcctaaggccttattctgggtacaagagtgtccacgaggtatctctgggctgtagtccg
cagttttctgcaacggaagaagattctgtcagctttttcagctctaaagctttcatcact
ctcccgccctgggaggggccccaggagggggtgtttgaatgtgaattgtttccccctgca
agaggagaagatggcatggttctgtatagctctgggaaccagggagggtttgttgccata
gagatcagagatggtaacatggtggccacggtaggaaatggagaggggagtaagactgag
ctgcgttctctaacgtatgttcacagcaaccacacatggtaccccatccagctgcacctg
ctgcctaacagcatccaactgaaggtgggtgaggagttggttaaggccaccctaagtctg
gagctccaggtcatccagcttcaagggcctctcttcctgggagggctgaacaaagaagcc
cggggagaggcaaggcaagctgggttgttgtccactgtgcctgggggtaaacctgctgtg
caaggaggctcctttaaaggctgcctccgggaaattagggtgaacactcaaagaacaggc
ctacctcatgctgccatcaccaaggacatcactgtaggctgtaagaccaggcaggttcca
aatgcgttgaccaccactagcccaacagatcatcccgagtttgatgttacaaccacacaa
ccaattaccaacaataagaagaacactaactttctgttgttgagtaagctagaagttctg
gagggaggccgggcgccactggagcccaaacatataagggtgaatctggattttcggaag
ttgggctttcatcagtcccaactgatgttccgcattgaggggcagcctgttcacggccag
ctccggctggacctcactcctgaccctgatgggatcctgggcgagcggcaggagaggact
ataacaacaggagcaggagaggtcgaccgcactttcagtatgctggacttgtggcagggc
cgtgtgatatacgtccacagtggttcagaggaccagcatgacttcttcatgttttcagta
ttcaccagaaataagaaggcacctcctgtatttctgaagggtaaccgcctgcatcagttc
gatatcagcatcagtcctgttaatgatgcacctgtgctcagcctgccggagggaaacctt
ttcacactgttggagaagtccaaacgacagctgacaacggatttgctgaaggtgtgggac
cctgacagcagtcctgcagatctggtgttcagctccctgggaaacctcaacactgaggtt
ggccaccttgagcaccaggaatacctcggcagggccattaacttgttctcactgaatgat
ctggaggagggtaagatctgctttgtccacactggggtccccacctcccggctggcactc
agggtcagcgacgggcagaagttgagcaatacagtagttttgaggatcattgccatgcca
ctcgaacacaaactggtgaacaacaccggcctggaggtgaaccaaggtggagcttccatc
atcacagccactcacctcgcagtacaagttaatgtgaatgatcaggcagtggagatccgc
tatgacgttacagagttgccacaatatggtgtgctccagcggttgcactcaagtggcgac
tggaaaccgacaagttccttctctcagaagcttctacaaaaagaacggatccgatacctc
agcacttaccatggtgttcagactcagagcaacatcactgatcactttaaatgtagaatc
agcattgattcccgggccactgaggaggttgttttccccatcatggtacgctggatccac
tttaaggtcacacgaagcaagatggagctcaacggtgtccagtctactgctgtcactcac
aaggaccttcatgtgatctccaagggtgttaaaatcaatgagagcgacctctacttaaga
cttctaacagttccaaagaaagggcagctattcctcgacaacaaaactctacaaaggaac
tcaacctttagccaaaagaatatcacagatggcttgatgaggtacgagctgctcaacatg
cttcaggatgacacaagagacacgttcagctttcaggtgttctcaacacatgctaactca
acagcttacgacttcagaatcaacatcaaagcccagtcgactgccatcacccttgtaaac
aaaggtctttcaaccctggaaggaggaagtaaggtcatcaacaaagacatcctgttcact
cacacgtcaagtaaccgggaggtccactacagcattacggtgagccccaggcacgggcag
ttgaggagaatcaacctttccaactcaacttccattaacgataacattgtgacattcaca
aatcaggatatcattgaggagaggatcatgtacgttcacgatgacagcgagaccaagcag
gattcctttatgtttcaaattatggtttacaaacccaacaaacacacaagcaaggaggat
agaaacacagctgaacacacctttaatatctctgtgcagcttgtcaatgatgagagacct
gtcagggttgtcgataaagttttccatgtagcccgcaataggcagaggttggtgacgttg
aatgaccttcgttaccgggacggcgattcagactttgaggacaattggttggtgtacacg
cgaagggggattcccatgggagagctggtgctgtccagtgataccagtcacaagctgtac
gaattcacacaacgggacctcgagcagaaaaaagtgttgtttgtccacagaggagtgagt
tttgggcgttttgtgcttttcgtatcagatgggaaacattacgtttcaacactgatggag
gtgatggcgcaggatccttaccttcaggtcgaaaacaacacgggcctcatggtccagcaa
ggtgggatcacaaccttgacctccgccaacctcagcatcatcagcaaccttgacatccga
gacccgcaggaagtgacatttgaggtcttccttccacctaaacacggcgtgctctgcttt
attgatggagatcgtgtaacagcagcagatgcaatttcaatattcacccagcgagattta
gtggagggtcgcctggtatatcaccatgacggcagccatgagttttcagatgggttcaat
gtgaccacaaggacaagggagaagagcacagtgaggaagatggacagagagaggagggag
atacaactggacattggagtgatggtaaaaatctacctggagagccaccagaggccgcca
acggtcatatgtaaccgtccagtggtggtggcggagggacagtatgtctccataagcaag
gaacacttagaggtggttcatgaggacagcaggccctcagagattgtttttattgtccaa
agtccgccctccctgggcttcctacagcggtttctccgtacctccatgtagggcatcaga
gagcagccaacaaattccttcacccaggaagacctcaatcacggattgattatctaccat
cagcaggctgcaggacacaccaacgactctgtcctgctgggtgcaaccaacggggtcaca
agtgttggacctatcaggctagagattgacattatccccatcctgctccctctacaggtg
tctgacttgacccttgatgaggggtcgtccctgccgctgaccactgacattatcaagatg
gccaatcatcacttctcagggatgaacttcctgtaccaggtcatcgtcccaccacaacat
ggacacttggagcacagccggatcccggggatgccaatcactgctttcactcacacagag
gtggaacgtgaatacatctcctatatccacgatggcagcgaaacactgagagacaacttt
accattgtggccaatcagacggaaatcaggaagcacagtctgccctgcgctgctcacatc
aatgtcatgcctgtcaatgatgagactcctgttgtcacaaccaacaagggtctgaaggtg
tgggtgggttcaatgacagaaatcaccacagatgatctcagtgcagaggactcagacact
cctgagccggagggactggagtttatcgtcacaccaccgagcaacggccacctggccctt
aagagcaccccctccagacacatcctgaacttcacccaaaatcacatacaaactggacag
ttgatgttcgtgcacagtggtgctttatcgggtggctttcagttccaggtgaacgacggc
ctgaacttcgcccctcgacagatcttcagcacaactgcccactctctggttctcactctg
cagagaaatcatcccatggaggtctaccaaggctctgtgacaccaatctctgagcaagag
cttctggccgtaaccaatgatgtaaacgccatcagaagaaaccattcggtggtgtttgca
ataactgatcctcctaaacttggccgcctggtccaccgtatgcccgacaactctacaaga
aacatttcaacgttcacacaaagcatggtgacagatggggttattttgtacgatcagaac
aagccgcagtcagtgggatggtcggctgcggacgctttctctttcactgtgtcctcccct
cctgctttgcttcctccacacaccttcaccatcttaatctcctatcaggccaacgaacat
catgacagccctcagcacaagaccagactattgagcaacgcaggtgctgtggtggcagag
ggaggcagggtgacaattgacagttctaaactcgatgcctccaatctccttgggaaagtc
ccagagccgcaccggaaagaccaccacatcctgtaccgcctgatatccctgccacgccat
ggggctctgtctatacgaggacataacctcaccaggaaccaacctgatttctctcaagtc
accctaaacaaatttggcatcacatatgtccatgatgactcagaaacgacgagcgacaac
ttcactttccgggcctgggtggctcctttggatcccttctcctcttcttcctcatctgac
agcctggcggtgacggagacgttcaacatcacagtgacaccggtcaacgaccagccgcca
ctgatcaggagcagagccccgagtattaaggtcgttgtcggagagagagtcgtactggga
ccagacaatctgcaggttgaggaccatgacacccctccagaggagctgcactaccttgtg
atcaaaaagcccaacaatggctacctgacgctgggggagagaccggagccggtgacctct
ttcacccagtatgatgtcaaccacggccggctgcacttaatacagcagggagagccctcg
ataggtgttttctacttcaacgtaaccgacggtcatcatcgtccactctacaaactgttt
agtttggaggtgataaagccctctgtctccatggtgaacaacactggcctgtcattgctt
caaggaagggccgctgtgatcctgacaaccaaccagtttgcagctcagaccaacagtcgc
atgcaggtcaacatcacctacacagtcaccacacaccctcgccacggacgcattgcgatt
aacgaccaggaagtcacaaccttccgccacgaggacgtgcagtttggacgcgttgtctat
cacatgactgatctcagcgaatcagaggacagcttccgagtctcagtgtcggcctcgtca
cccggtgttcactatggaaatgtaacagcacaggtgaatgtaactgtgaagcctctgatc
tacctgagggaacaagtgagagtgcccagtggtatcgctgtgaagctggggaaagccatg
attgatgcctccgagctggcgagaatcagccgagcagacccagtttttcaggttctctcg
ccaccaaaacatggaaaactagtcaagatgacctatgacccgaaccgagcatcagaggtg
ctgaagtcgtttacgttcagagacgtggtgcagggccgggtggccatcgaggagactctc
agtgacagccagcagcatgacaacaaatcagcattcgcaacagctcgaggccacgccccc
gccacacctctcaacgattccttcatcttcctgctgaaggctggaaacgtccaaccggcg
aagggcgagcttcacttcaccatctttccccaccaccagatgcattatggtccaagcagt
tcaaatacagacggtgcaagtcctgaacaaacgacaaacagacttccgacccataataag
actactactggtagaggaggcgggagagggggttccacgacgctcagaggggatgaggtg
ggtttgcccccccacattttgacacataagaaccatagcaggacacagcacaagttgagg
tctaacaaccgcttggggaaccatacacgcagcggcagtcatggaggaagatcagggagt
cgtgcagagggagggggtcacagtcacgtaccgcagccccacactccttccgtttccatc
cctcctgtcgttcacccggtccacgttgagctcctccctcgccccgcctccgaccctctc
ctcattatccttccgctgctggcctgtttgttcctcattgtaatcctcgtagttttgata
ctggtgttccgccgcatcaaggagaaaaaggcccggctgcggctcctccagcagctcgct
gcagtgacgttacccactgaggacagcccttacatgggccgggcggagcggagcgtggct
atgccctccgtggtggtcacccagctgggccctgcaagctgcccttcctcccctttaagg
gtacctttaagtcccagaaggaagagtctggcccctgggatgaccttctgggggccattt
gaagctgatagagcaggtggtgataagaatattagaggtggtaactgtgttggaaaagat
caagtaactgcaggagtccaaacagctctgagatctaggtcccctactcccactcttaga
gacaaccagtactgggtttga
DBGET
integrated database retrieval system
