Anoplopoma fimbria (sablefish): 129103120
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Entry
129103120 CDS
T09102
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03013
Nucleocytoplasmic transport
afb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129103120 (srrm1)
03015 mRNA surveillance pathway
129103120 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129103120 (srrm1)
03041 Spliceosome [BR:
afb03041
]
129103120 (srrm1)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129103120 (srrm1)
Spliceosome [BR:
afb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
129103120 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
129103120
NCBI-ProteinID:
XP_054469383
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Position
15:complement(16931016..16941424)
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AA seq
860 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKVDDDKREKDKEIRERAQSKSPRRRKTRSPSPRRR
SPVKRERKRSASRSPRRKASPVGNGSPPPPLMQLPTKPLEQLVESETLDGALPEPVIQET
PSTCDTVVEVVNPEPVTEVKEASPEKTHKKEERPRSREREKDSRRERPHHRSRSHSRTRR
RRSRSRSYSPRRRQSPRRRMSPRRRSPPRRGPPNSRNRHRRSPVRRRRSRSASSSGSSSS
NSRSPKKAMKRISNTPPRKPVHHPDNTISPAGKDRRSPSPRARRGRGSPSPARSSGLKRK
PGGRGDSPSDNAKARPSEGSDSEEDKNEKEATADSVQQRRQYRRQNRQSSSDTGSSSTED
EGPKRPAAGPGARNGDVRRRRSRTPSPRRRHRDASPRKRRSPSPGRRRRTPSPPRRRRSP
SPLRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPLPPQKRKLSSSPSKRSSPGAKRRVSR
SPKRRSSPAPRRRTPPSSSPSRHRRSPMLPNVRPSRDTRSPVASRLSPSPANRGRPIRGS
TSPQRRFETSSSSPANQRRQQSPSHSGKPIRRVSRTPEPRNNQRPSPGPQPLRRASSRSR
SVSPQPAAQKRPVPASASPSPSRSASGSPPPAKKASSGSGSQSPNKNSDVDGSGKKKKKK
KEKKHKKEKKHKKHKKHKKEKSGGPVTGDGHENHGGEEDGESRKESDSEVDDSLDDLEKH
LREKALRSMRKAQLSPSQMS
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggtacaagtgcggagcaggacaaccgtttcagcaacaag
cagaagaaactgctgaagcagctgaagtttgcagaatgtctggacaagaaggtggacatg
accaaagtgaacctagaagtcatcaagccttggattacacagcgagtgacagagatcctg
ggtttcgaggacgacgtcgtcatagagtttatatttaaccaacttgaggagaagcacccg
gatagcaagatgatgcagatcaacctgacaggcttcctgaatgggaagaatgcccgggag
ttcatgagggacctatggcccctgctgctgagtgcccaggagaacatcgcaggcatccca
tctgcttttctggaacagaagaaggaggaaataaaacagagacagattgaacaggagaag
ctagcttctctgaagaaggtcgatgatgataaaagagaaaaggacaaggaaatcagagag
agggctcagtcaaaaagcccaaggaggcgaaagacaaggtcaccatcaccccggcgaagg
tcaccagtgaagcgggaaaggaaacgtagcgcctcccgctccccaagacgcaaagccagt
ccagttggcaacggttcaccccctccccctctgatgcagctgcccacgaaacctttggag
caacttgttgagtcagaaacattagatggagccctgccagaaccagtcatccaagaaact
ccttccacctgtgacacagttgtggaggtggtaaatccagaaccagtgactgaagtcaaa
gaagcttcaccagagaagactcataagaaagaggaaaggcccaggtctcgggaaagggag
aaggacagcaggagggaaagacctcaccaccgttctcgttctcattcccgtactcgcaga
cgacgctcccgttctcgatcttactcccctcgtagaagacagagtcccaggaggaggatg
tctcctcgtagaaggagcccccccagacgtggcccccccaactccagaaacagacataga
cgctcccctgtccgcaggaggcgctctcgctctgcttcatcctccggcagcagctcctcc
aactctcgctcgcctaaaaaagctatgaaaagaatatctaacacgccaccccgaaaaccg
gtccatcatcctgacaacaccattagccctgcaggaaaagacaggcgctccccatctcca
cgggccaggaggggcagaggctctccatcaccagccagatcatctggtttaaagcgaaaa
ccaggaggaagaggcgattctccgtctgataatgccaaggccagaccttccgaagggtcc
gattcagaggaggataaaaatgagaaagaggcaacagcagattcggtgcagcagcggcgt
cagtatcgcaggcagaatcgacagtcttcttcagatacagggtcttcctcaaccgaagac
gagggacctaagaggccagcagcagggccaggtgccagaaatggggatgtcaggaggaga
cgcagccgtacaccctcccccaggaggcgacacagagatgcctctccaaggaaaagacgt
tctccatctcctggacgcaggcgccgcacaccgtctcccccacgacgccgcagatctccc
tctcctcttagaagaaggtctccttccccacctccccgtcgtcgttctccatcccccaga
cgatattctccccctatccagcgtcgctacagcccctcacctttgcctccacagaagagg
aagctgtctagctctccctcaaaacgctcctcgccaggggccaaacgacgcgtctccagg
tcgcccaagcgcagaagttctcctgctccgaggagacgcacgcctccatcctcatctcca
tccagacacaggaggagccccatgttgcctaatgtcaggccaagcagggatacgcggtcc
cctgttgccagccgcctctccccgtcccctgcaaaccgcggtcgccccataagaggttcc
accagtccgcagaggcgttttgaaacctccagttcatctccagctaaccagcggaggcag
cagtccccctcacacagtggcaaacccatccgcagggtgtcccgcaccccggagccacgc
aacaaccagcgaccttctcccggtccccagcctctgaggagagcatcctccaggtccaga
tcagtttccccccagccagcagctcagaaacgtccggtccctgcatctgcctccccttcg
ccatcccgctcagccagtgggtctccaccaccagccaaaaaagccagcagtggttccggc
agtcaatccccgaacaagaattcagatgttgacggcagtggaaagaaaaagaagaagaag
aaggaaaagaagcataagaaggagaagaagcacaagaaacacaagaagcacaagaaggag
aagagtggcggcccggtgactggagatggacatgaaaaccacggtggggaggaggatgga
gagtcaagaaaggaatcagacagtgaagtagatgacagcttggatgacctggagaaacac
ctaagagaaaaggccctgcgctccatgaggaaggcccagttgtctccatcacagatgtct
tga
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