Anoplopoma fimbria (sablefish): 129103179
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Entry
129103179 CDS
T09102
Symbol
srsf5a
Name
(RefSeq) LOW QUALITY PROTEIN: serine and arginine rich splicing factor 5a
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03040
Spliceosome
afb05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129103179 (srsf5a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
129103179 (srsf5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129103179 (srsf5a)
Spliceosome [BR:
afb03041
]
Common components
Common spliceosomal components
SR proteins
129103179 (srsf5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_occluded
RRM_5
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
129103179
NCBI-ProteinID:
XP_054469481
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All DBs
Position
15:complement(5879662..5886353)
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AA seq
339 aa
AA seq
DB search
MSGCRVFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGK
ELCSERVTIEHARSRRGRGGGPGGMGGRFSGEGXGGGGGGGGGGSSGGGGYRPSRSSGSR
YGPPVRTDHRLIVENLSSRISWQDLKDLMRKAGEVTFVDAHRPNKNEGVVEFASRSDLKN
AISKLDGSELNGRKLKIFEDSRSHSKSRSRSRSRSYSRSKSRSRSRHRSRSRSRSMSRTP
EKKTSGGGRASGRSLSRSKSRSKSRSKSRSKSHSKSRSKSRSKSRSKSRSKSRSKSRSKS
RSKSRSPVPPAQKKPSRSRSRSRSRSRSRSRSASADSKH
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgagtggttgtcgtgtcttcatcggccgcttgagcccacacgccagggagagagacgtg
gagaagtttttcaagggatatggacggattcgtgaaatcaacttaaagaatggatttggc
tttgtggaatttgatgaccacagagatgcagatgacgctgtttacgagttgaatggcaaa
gagctgtgcagtgaaagggtcactattgagcacgctcgctccagaagaggaagaggtggc
ggccctggaggaatgggaggacgttttagtggtgaaggcnncgggggtggtggtggtggt
ggtggcggcggaagcagtggcggcggtggctatcgtccatctcgcagcagtggatccagg
tatggcccccctgtgaggacggatcacagactcattgtggagaacctctcttcacgaatc
agctggcaggacctgaaagacctgatgagaaaagcaggtgaagttacctttgtggacgca
cacaggcccaacaaaaatgaaggagtggttgagtttgcatcccgcagtgacctgaagaac
gccatctccaagctggatggatcagagctgaatggacgcaagcttaagatctttgaggac
agcagaagccacagcaagagccgctcccgttcccgctcccgcagctactcccgctcaaag
agccgttccaggagccgccaccgttccaggagccgctccaggtccatgagtcgcaccccg
gagaagaagacatcaggagggggcagggcgtcaggcagatccctctcaaggtcaaagtct
cgctccaagtcccgctccaaatcccgttccaagtctcactccaaatcccgctctaaatcc
cgctccaagtctcgctccaaatcccgttccaaatcccgctcaaagtctcgctccaagtcc
aggtctaagtcccgctcacctgttcctcctgctcagaagaagccgtcccgctcccgttct
cgttcacgctctcgctcccgttctcgctcccgctccgcatctgcagacagcaaacactga
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