KEGG   Anoplopoma fimbria (sablefish): 129103219
Entry
129103219         CDS       T09102                                 
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein
  KO
K20183  Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb04140  Autophagy - animal
afb04142  Lysosome biogenesis
afb04148  Efferocytosis
afb05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:afb00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    129103219 (vps39)
   04140 Autophagy - animal
    129103219 (vps39)
   04148 Efferocytosis
    129103219 (vps39)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    129103219 (vps39)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:afb04131]
    129103219 (vps39)
Membrane trafficking [BR:afb04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    129103219 (vps39)
SSDB
Motif
Pfam: Vps39_1 CNH zf-Vps39_C TPR_Vps41 Clathrin VPS18_solenoid_2nd Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 129103219
NCBI-ProteinID: XP_054469543
LinkDB
Position
15:complement(3109887..3135494)
AA seq 875 aa
MHDAYESVPILEKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVLSKAKGATLFTCDLQQTSTGE
ERLRMCVAVKKKLQLYYWKDREFHELQGDFSAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVTPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGQNIVYVASNHFVWRLVPVSI
ATQIKQLLQDKQFELALQLAMKDDSDGDKKQQIHHIQNLYAFNLFCQKRFDDSMQVFAKL
GTDPTHVIGLYPDLLPSDYRKQLHYPNPLPTLSVAELEKAHLALIDYLTQKRSHLVKQLN
DSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVAMVSPLLRLENNHCHIEESE
YVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGGENLGI
IFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAIPYLEHIIYVWDD
KGSEFHNVLIQLYLERVQGLMKQYLNSLPEGVPAVAAGKEEGDLGEFRNKLLSFLDISTS
YEPARLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHSHYNSLVEG
NKDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLQAALHVLELHHSKLNTTKAINLLPA
NTQIREIRVFLESVLEEKAQRKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTCR
VCKKKIGSSAFARYPNGVVVHYFCCKDRNMCPTEQ
NT seq 2628 nt   +upstreamnt  +downstreamnt
atgcacgacgcgtatgagtcggtgcccattctggagaagctgcctctgcagattgactgt
ctggcagcctgggaggactggctgctagtggggacaaagcctggacatcttctcctctac
aggataaagaaggatgcaggcaccaaccggttcgaggtgacgctggagaaatccaataag
aacttctcaaagaagatccagcagctgtacgttgtctcgcagtataaaattcttgtcagt
cttctcgagaacaacatccacgtccatgacctcctgaccttccagcagatcactgtgttg
tccaaagctaaaggcgcaacactcttcacctgtgacctgcagcaaaccagcacaggagag
gaaaggttgagaatgtgtgttgcagtgaaaaagaaactccagctgtattactggaaggac
cgagagttccacgagctgcagggggactttagtgcaccagatattccaaagtccatggcc
tggtgtgaaaactccatctgtgttggtttcaagcgagactattacctcattcggatggat
ggccggggctccatcaaggagctcttccccaccggcaaacagttggagcctctggttacc
ccactggctgatgggaaggtggctgttggccaggatgacctaactgtagtgctaaatgaa
gagggcgtttgcacccagaagtgtgccctgaactggacagacatcccaatagcaatggag
caccagcctccgtacatcatcgccgttcttcctcggtacgtggagatccggacgtttgag
ccgaggctgctggtgcagagtgtggagctgcagagacctcgcttcatcacctcagcaggg
caaaatattgtgtatgtcgccagcaaccactttgtgtggcgcctggtgcccgtgtcgata
gccacccagatcaagcagcttcttcaggacaaacagtttgagctggctctccagctggcg
atgaaggatgattcagatggggataagaagcagcagatacatcacatccagaatctctac
gccttcaatctgttttgccagaagagatttgatgactccatgcaggtgtttgccaaactg
ggcacagatcccacccatgtgattggactgtacccagacctgctcccgtcagactaccgc
aaacagctgcactaccccaaccctctgcctactctgtctgtggccgagctggagaaggct
catctcgctctcatcgattatctcacacagaaacgtagccacctcgtgaagcagctgaat
gactccgacccgtctacaacgtctccactcatggagggcacgcctactattaaaagccgc
aaaaaactccttcagatcatcgacaccacgctgctgaaatgttacctgcacaccaacgtg
gccatggtgtcccccctcctccgtctggagaacaaccactgccacatcgaggagagcgag
tacgtcctgaagaaggcccacaagtacagcgagctcataatcctctacgagaagaaggga
ctgcaccagaaagctctgcaggtgctgctggaccagtccaccaaggccaactccccgctg
aagggccacgagcggacagtgcagtacctccaaagactgggaggggagaatttgggaata
atctttgagttttctccctgggtgttgaagatctgtccagaggatggcctgaagatcttt
actgaggacctgaccgaggtggagactttgcccagagacaaggtgctgaacttcctgaag
gagggctttaaggagctcgccatcccatatttggagcacatcatttacgtgtgggacgac
aagggctcggagtttcacaacgtgctgatccagctctacctggagagggtccaaggcctc
atgaagcagtacctcaactcactgccagaaggagttccagctgttgccgcggggaaagag
gaaggtgatctgggagagttcaggaacaagctgctgtctttcctggatatttctaccagc
tacgaaccagccagactcatcagtgacttcccctttgatggcctgctggaggaacgggct
ctgcttctgggtcggatgggtaaacacgagcaggcgctcttcatctatgtgcacatcctg
aaagacacccgcatggctgaagaatactgtcacagccattacaacagtttagtcgaaggg
aataaagatgtttatctgtctttgctgcggatgtacctgtcgcctcctgacgttcactgc
ttggggcccatcaagatggagctgtcggagcctcaggccaacctgcaggcggctctgcac
gtcctggagctgcaccacagcaaactcaacaccaccaaggccatcaatctgctccctgca
aacactcagatcagagagatccgggtgtttctggagagcgttctggaggagaaggctcag
aggaaacgctgcaaccaggtgctgaagagtctgctgcaggccgagttcctccgggtgcag
gaggagcgaatcttccaccagcaggtcaaatgtgtcatcactgaggaaaagacctgcaga
gtctgcaagaagaaaataggatccagtgcgtttgccaggtatcccaacggcgtggtggtg
cattacttctgctgcaaagaccgcaacatgtgtcccaccgagcagtga

DBGET integrated database retrieval system