Anoplopoma fimbria (sablefish): 129103256
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Entry
129103256 CDS
T09102
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129103256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afb03021
]
129103256
03019 Messenger RNA biogenesis [BR:
afb03019
]
129103256
Transcription machinery [BR:
afb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129103256
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
129103256
U7-dependent histone pre-mRNA processing factors
129103256
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
129103256
NCBI-ProteinID:
XP_054469594
LinkDB
All DBs
Position
15
Genome browser
AA seq
690 aa
AA seq
DB search
MATKRKIEVIVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KSVQGQRVSGILVKKNFNYHILNPSDLSTYTELAMSTVKQTQAIPFTGPYSLLVCHLRNL
TGDVEELDGTEKNTLKVFKNITLVHEAGMVLLEWLANPLNDMYADAVTTVVLEVQSNPKA
QKAMETQSAVMDMDIFQTRLGVMLQDMFGEECVDFSDDKNISVTVDGKAVHICLETRSVC
YEDECTEDDSLREMVELAVQRLYDALNPVI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaagcgaaagatagaggtgattgtccccgcagaggagagtgaccagctccta
attcgtccactgggcgctggtcaggaggttgggaggtcatgcatcatcctggagttcaaa
ggaaggaaaattatgctggactgtggtatccacccggggttggaggggatggatgctctc
ccctacatagacctgatagacccagctgagatagacctgctgctcatcagccatttccac
ttggatcactgtggagctctgccctggttcctacaaaagaccagctttaaaggcaggact
ttcatgacccacgccaccaaggccatctaccgctggctactgtcagactacgttaaagtc
agcaacatttctgcagatgacatgctgtacactgagactgacctggaggagagcatggat
aagatcgagaccatcaacttccacgaggtcaaggaggtagcaggaatcaagttctggtgc
taccacgcaggtcatgtgctgggagcagccatgttcatgatagaaatagctggagtcaag
ctgctgtacacaggagacttctcccggcaggaagacaggcatctgatggcagcagagatc
cccagtgtcaaacctgacatcttaatcatagagtctacctacggcactcacatccatgag
aagagggaggagcgagaagctcgcttctgtaacacagtccacgacatcgtcaacagagaa
ggccgctgtttaatccctgtgtttgccttggggcgggcccaagaactgctgctcattctg
gatgagtactggcagaaccacccagagctccatgacatccccatctactatgcttcatcc
ctggccaagaagtgcatggctgtgtaccagacctacgtcaacgcaatgaacgacaagatc
cgcaaagccatcaatatcaacaacccttttgtcttcaagcacatcagcaacctcaagagc
atggatcactttgatgacatcggtcctagtgtggtgatggcatctcctggtatgatgcag
agcgggctctccagagagctctttgagagctggtgcactgataagaggaacggagtcatc
atcgctggatactgtgtagagggcacactggccaagcacatcatgtctgagccggaggag
atcaccaccatgtcggggcagaagctgcagctcaagatgtcggtggactacatctccttc
tctgcccacactgactaccagcagaccagcgagttcatcagggccctcaagccacctcat
gtgatcctggtccatggggagcagaatgaaatggcccgtcttaaggctgcactgatcagg
gagtacgaggataacgaccaggttcacatcgaagtccacaaccctcgcaacacagaagct
gtcacccttaacttcaggggagagaaattggccaaggtgatgggctctctggctgataag
aagtctgtccagggccagagggtgtcaggcatactggtgaagaagaacttcaactaccac
atcctcaatccctctgacctttctacatacacagagctggccatgagcacagtgaaacaa
acccaggccatcccgttcactggaccttactcactgctcgtctgccacctgaggaacctc
accggtgacgtagaggaactggatggaaccgagaagaacaccttgaaggtttttaaaaac
atcactctggtccacgaggctggcatggtgctgctggagtggctagcaaaccctctcaat
gacatgtatgccgacgctgtcaccaccgtagtgctggaagtccagtcaaacccaaaggct
cagaaagccatggagacccagagtgccgttatggacatggacatcttccaaacccgacta
ggagtcatgttgcaggacatgtttggagaggaatgcgttgatttcagtgatgataaaaac
atctctgtgacagtagacgggaaggcggttcacatctgcttggaaacgaggtcggtgtgc
tacgaggatgaatgcacagaggacgactccctgagagagatggttgagctggcagtgcag
cggctctatgacgccctaaacccggtcatctga
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