KEGG   Anoplopoma fimbria (sablefish): 129103353
Entry
129103353         CDS       T09102                                 
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb03082  ATP-dependent chromatin remodeling
afb03083  Polycomb repressive complex
afb04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:afb00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    129103353
   03083 Polycomb repressive complex
    129103353
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    129103353
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:afb03036]
    129103353
Chromosome and associated proteins [BR:afb03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     129103353
  Histone modification proteins
   HAT complexes
    HATB complex
     129103353
   HDAC complexes
    Sin3A-HDAC complex
     129103353
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     129103353
    PRC2.2
     129103353
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     129103353
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    129103353
  Chromatin remodeling factors
   NuRD complex
    129103353
   NuRF complex
    129103353
   NuRF complex (fruit fly)
    129103353
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 CAF1C_H4-bd WD40_Prp19 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd Beta-prop_DCAF12 Beta-prop_WDR90_POC16_2nd WD40_RFWD3 Beta-prop_WDR19_1st ANAPC4_WD40 Beta-prop_RIG_1st WD40_MABP1-WDR62_1st eIF2A Beta-prop_SPT8 MIOS_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 129103353
NCBI-ProteinID: XP_054469762
LinkDB
Position
15:complement(18545274..18549144)
AA seq 424 aa
MADKDAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
YSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEG
YGLSWNSNLSGCLLSASDDHTICLWDISTVPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILASGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGAADT
EVQA
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggctgataaagacgctgcctttgatgatgctgtggaggagagagtgatcaatgaggag
tacaagatctggaagaagaacacccctttcctctatgacctggtcatgactcacgccctg
gagtggcccagcctcactgcccagtggctcccagatgtcaccagaccagaggggaaagac
tacagcgtacacaggctggttttgggaacacacacgtccgatgagcagaatcacctcgta
attgcgagcgttcagctccccaatgacgatgcccagtttgatgcatcacactatgacagc
gagaaaggagagtttggaggctttggatctgtaagtgggaagatagagattgagatcaag
atcaaccatgagggggaagtgaacagagcccgctacatgccccagaatccttgcatcatt
gcaaccaagacccccactagtgatgtgctggtatttgattacacaaagcacccctccaag
cctgacccttctggagaatgcaccccagatctgcggttgcgaggccaccagaaggagggc
tatggcctctcctggaactcaaacctcagcggctgcctcctcagtgcttctgatgaccac
acaatctgcctttgggacatcagcacagtgcccaaggagggaaagatagtggatgccaag
accatcttcacgggccacacagctgtggtggaggacgtttcctggcacctgctccacgag
tcgctctttgggtccgtggccgatgaccagaaactcatgatctgggacacgcggtccaac
aacacctccaagcccagccatgcagtggacgcccacaccgctgaggtcaactgcttgtcc
ttcaatccctacagtgagttcatcctggcctctggctctgcagataagactgttgctctt
tgggaccttaggaatctgaaactaaagctgcactcgtttgagtcacacaaggacgagatc
ttccaggttcagtggtctcctcataacgaaaccatcctggcatccagtggtaccgacagg
aggctcaacgtctgggacctcagtaagatcggagaggaacagtcacctgaggatgctgag
gacggccctcctgagctgctgttcatccatgggggacacacagccaagatctcagacttc
tcttggaaccccaacgagccttgggtcatctgctctgtatcagaggacaacatcatgcaa
gtctggcaaatggctgaaaatatctacaacgacgaggaccctgaaggtgctgcagataca
gaggtccaagcatga

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