Anoplopoma fimbria (sablefish): 129103358
Help
Entry
129103358 CDS
T09102
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03015
mRNA surveillance pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129103358 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
129103358 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129103358 (pabpc4)
03041 Spliceosome [BR:
afb03041
]
129103358 (pabpc4)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129103358 (pabpc4)
mRNA cycle factors
Stress granule specific factors
129103358 (pabpc4)
Spliceosome [BR:
afb03041
]
Complex C
Other components
Complex C specific factors
129103358 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
OB_RNB
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
129103358
NCBI-ProteinID:
XP_054469771
LinkDB
All DBs
Position
15:16992340..17000340
Genome browser
AA seq
627 aa
AA seq
DB search
MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMTDDHLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEK
HEDANKAVEDMNGTELHGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFTPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPASGYFMPAVPQAQNRTT
YYAPNQMAQMRPNPRWQQQGGRGQGGFQGIPSSLRQPGPRANLRHMSPGGGSQGPRASGQ
AMAPRPSMGVPGPRAMPPYKYASGVRNPNPQVVQPINLQQAQAAVHVQGQEPLTASMLAA
APPQEQKQMLGERLFPLIQSMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVA
VLQAHQAKKDATQKVGSIATTAAAATS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagcgaccgggagttatccgatggcttctctctacgttggcgacctgcacccc
gatatcacggaggctatgctgtatgagaaattcagcccagccggaccggtgctctccatt
cgggtatgccgtgacatgatcacccggcgatccctgggatacgcgtatgtgaacttctct
caacccgctgatgctgagagagccctggacaccatgaactttgacgtggtgaaagggaag
ccaatcagaatcatgtggtcccaaagagacccctccctcaggaaatctggagtgggcaac
gtgttcatcaagaacctcgacaagtccatcgacaacaaagccctgtacgacaccttctct
gcctttggcaacatcctctcctgcaaggtggtgtgtgatgaaaatggctccaagggttac
gcttttgtccactttgagacccaggatgctgctgatcgtgccattgagaagatgaatggc
atgcttctgaatgaccgcaaggtgtttgtgggtcgtttcaaatctcgcaaggaacgggag
gctgaacttggtgccaaagccaaagagtttaccaatgtctacattaagaactttggagat
gatatgactgatgaccacctgaaggagctgtttgacaaatatggtaaaacactcagcgtt
aaggtgatgacagaccccactggcaaatccagaggctttggattcgttagttacgagaaa
catgaggacgctaacaaggctgtagaggacatgaacggcaccgaactccacgggaagact
gtgtttgtgggccgggctcagaagaagatggagcggcaggcagagctgaagaggaagttt
gagctgctgaaacaagagaggatcagtcgttatcagggtgttaatctttacattaagaac
ctggatgacaccatagatgatgagaaactgcgcaaggagttcactccgttcgggtctatt
acaagtgctaaggtgatgctagaggagggtcgctccaagggcttcggctttgtctgcttc
tcctctcccgaagaggccaccaaggccgtgaccgagatgaacggacgcatcgttggctcc
aaaccgctctacgtggctcttgctcagcgcaaagaggagcgcaaagcccacctcaccaac
cagtacatgcagcgtattgctggcatgagggcaatgccggctaatgccatcatcaaccag
ttccagcccgctagtggctacttcatgccagctgtgcctcaggcccagaataggactaca
tactatgcaccaaatcagatggcccaaatgcgacccaacccccgatggcagcagcaaggt
ggtagaggtcaaggtggtttccaaggaatacccagctcgctgcgtcagccaggaccccgt
gccaacctgagacacatgagtcctggtggcggcagtcagggcccacgagcctctggacag
gccatggctccccgtccctcaatgggagtccccggcccccgggccatgcctccttacaaa
tatgcctctggtgtccgtaaccccaacccccaggtggtgcaacctattaacttacagcag
gcccaggcagctgtgcacgttcagggccaggagcctctcacagcctccatgctggctgct
gcaccccctcaggagcagaaacagatgcttggtgagcgtctcttcccgctgattcagtcc
atgcatgccaacctggcaggaaagatcaccggcatgttgctggagattgacaactctgaa
ctgctccatatgctggagtcccatgagtctctgcgctcaaaggtggaagaagccgtcgcc
gtgctacaagcccaccaggcaaagaaagatgccactcaaaaagtgggcagcatagctact
acagctgctgctgcaacatcctaa
DBGET
integrated database retrieval system
