Anoplopoma fimbria (sablefish): 129103557
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Entry
129103557 CDS
T09102
Symbol
si:ch211-266g18.9
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
129103557 (si:ch211-266g18.9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129103557 (si:ch211-266g18.9)
Membrane trafficking [BR:
afb04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
129103557 (si:ch211-266g18.9)
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Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
Clathrin
zf-Vps39_C
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
129103557
NCBI-ProteinID:
XP_054470053
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Position
15:25541894..25548073
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AA seq
838 aa
AA seq
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MAFRAFTHTHVYEKQSATKEKDKSSIQCIEYYDRNVYIGTKDATVLHLILPSGTDGDPSV
GQSKIRECRVRKLGSSTQVAQLRVIPIFNHLLVLWDRSVMALNMFSLEPVPALKKIPHVH
LFEVCNSLLEAQAACVEMVTSSSRRKLIRIHVVGVDRWDVVREVPLLQDPVALAVDGACV
CVGTSDRYLLYDVRTGSSEELFPHNHSRQRVIVTSMGRGEFLLNGPESLGMFVMKTGICQ
RPPLQWPQEVLAAGVCFPYSVTLQPEVLSVYSMVDQQCKQTVSLSGAIGLLCTSDGVLVF
TERDIFSLRLVPLKEQIQALVSDERVEEALLLLDGVQGHRPLDSYKELQKEITCLAGFVH
FYQEGFSEARDLFITGELDPREIIRLYPEIQSCLSEEFQSQLDQVNKGRDLQLLCRENRS
TFHHYLAFLGDFLRAVRGTEQGLECSKEVDCALLGLYTELGDTENLQQLLAFPNECRLDH
CAPVLEQHSRYFALGSLYQSHGNHIDAIKTWVKIADGLHKDLSRSDVYGHIVWALSQLQD
KDAVWKFADWTLQKNQEIGVQIFNKRPPDDRFDTQDVLALMEKYPLALVLYLEFLIHDLN
SEEERLHNRLALAYITQSLSEEEESVLRKTRGKLQQLLWESKFYDVSTVYERVELATLHI
EKAILLGRTGGHFQALQVLVHQEGDLQAAEAYCCRAAQGRDTQFRQTLLLTLLQIYLSSE
DHRSAAVDLLNNNPRVLAAEKVIQLLPDFWSVQLVSQFLVGSLRETVHQRRMAKLQKALG
QVELMRHRVIWMQASKTKFRLDKGQKCKVCQRDLTEPQFACNLTGELMHTGCPGFSSS
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagagcatttacacacacacacgtctatgaaaagcaatcagccacaaaagaa
aaggacaaatccagcatacagtgcatcgagtactatgaccgaaatgtgtatatagggacc
aaagatgcaacagtcttgcatctcatccttcccagtggcacagatggagacccgagtgtt
ggccagagcaaaattagagagtgtagggtgagaaaactaggctcaagcacccaagtagcc
caactgagggtaatcccaattttcaaccaccttctggtcctgtgggaccggagcgttatg
gccctcaacatgttttccttagagcctgttcccgccctcaagaagatcccgcatgtgcat
ttgtttgaggtgtgcaactcgttgctcgaagcccaggcagcatgtgtggagatggttact
tcctccagccgcaggaagctgatccgaatccacgtggtgggagtggacaggtgggacgtt
gtaagagaagtccctctgctccaggatcctgtggccttggcagtggatggcgcctgcgtg
tgtgtaggtaccagcgacaggtatctcctctatgatgttcggaccgggagcagtgaggag
ctttttcctcacaatcacagcaggcagcgagtcattgtaacctcaatgggacgaggggaa
ttcctcctgaacgggcctgaatctttgggcatgtttgtgatgaagacagggatctgccag
cgccctcccctgcagtggcctcaggaggtgctggcagccggagtatgtttcccttacagc
gtaaccctgcagcccgaagtgctgtctgtctacagcatggtagatcagcagtgcaaacag
actgtgagtctcagcggagcgattggtctgctctgcacatcagatggtgtgttagtgttc
acagagagagacattttcagcctgcgtctagtgccactcaaagagcagatccaggcactt
gttagtgatgagagggttgaggaggccttactgctgctggatggagttcaaggccatcgt
ccacttgactcatacaaggagctgcagaaggagatcacttgcctcgctggatttgttcat
ttttaccaggagggtttttctgaggccagggatctattcattacaggtgagctggacccc
agagaaatcatccgcctctaccctgaaatccagtcgtgtctcagcgaggaattccaatcc
cagcttgatcaagtgaacaagggcagggatctccagctgctctgcagagagaacaggagc
acatttcatcattacctggccttcctgggagattttcttagagcagtaaggggaacggag
caaggcctggagtgcagtaaggaggtggactgcgccctcctggggctgtacacagaactg
ggagatactgaaaatctgcagcagctcctggcatttcccaatgagtgcaggctggaccac
tgtgctcctgttttggagcaacacagcagatattttgcattgggttccctctatcaaagc
cacggaaatcacattgatgcaattaagacctgggtgaaaattgcagatggcctccacaaa
gacctgtctcgctcagatgtatatggacacatagtgtgggctctcagtcaactgcaagac
aaagatgctgtgtggaaatttgcagactggactcttcaaaagaaccaggagataggggtg
cagattttcaacaagcgtccaccagatgatcgatttgacacacaagacgtccttgctctc
atggagaagtacccgctggcactggtgttgtatcttgagttcttaatccatgatttgaac
agcgaggaggagagacttcacaaccgtctggccctggcatatattacccagtcgctctca
gaggaagaggaatcagttttgaggaagacgagagggaagctgcagcagctgctatgggaa
tccaaattttatgacgtgtccactgtatatgagagagttgagttggcaaccctgcacata
gagaaagccattctccttggtaggaccggtggacactttcaggcactgcaggtgctggtc
caccaggagggagacctccaggctgcagaggcctactgctgcagggctgcccagggccgg
gacacgcagttcaggcagacgctgctgctcactctgctccaaatctacctgagctctgag
gatcacagaagcgctgccgtggatctgctcaacaacaatcctcgggttcttgcggcagag
aaggtcatccagcttcttcctgatttctggtctgttcaactggtctcccagtttttagtt
ggatccctcagagaaacagtccaccagaggcgcatggcgaagctgcaaaaggctttgggc
caggtagagctcatgcggcacagagtcatttggatgcaggcctcaaaaacaaagttcagg
ctggataaggggcagaagtgtaaggtttgtcagagagaccttacagagccacagtttgcc
tgtaacctcactggtgagctgatgcacacaggctgtcctggtttttcctcatcgtaa
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