Anoplopoma fimbria (sablefish): 129103647
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Entry
129103647 CDS
T09102
Name
(RefSeq) neuronal PAS domain-containing protein 3
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
afb03000
]
129103647
Transcription factors [BR:
afb03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
129103647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
129103647
NCBI-ProteinID:
XP_054470195
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All DBs
Position
15:1185759..1456916
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AA seq
1055 aa
AA seq
DB search
MIRIFPDFSVQVTASGAGGGGGGGGMVTGPPVGRVPGATNGSPQSMQGITAYQQSDPYWE
RPANAGSCSAARPKTLHLAGQQHTSSPWLQALRKEKSRDAARSRRGKENFEFYELAKMLP
LPGAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKAIGAQRRRTHS
GVASEIFEPHLGSHILQSLDGFVFALNKEGRFLYISETVSIYLGLSQVELTGSSVFDYIH
PGDHVEMAEQLGMKLPPGRGLSLSQGAVNEDGASSASSSSHSETPEPVESSSPSLLAPDN
LLERSFFVRMKSTLTKRGVHIKSSGYKVIHVTGRLRIRMTLTHSRSVPNQIMGMVVVAHA
LPPPTINEVRIDCQMFVTRVNMDLKFIYCENRVSDYMDLTPVDIVGKRCYQFIHAEDVEG
IRECHLDLMNKGQCVTKYYRWIQKNSGYIWIQSSATLAINAKNPNEKNVIWVNYVLSMHE
YKDTPMDIAQLPNLPEKTSESSETSDSESESKENSDNEKSEGKPGRQSEREDPETDSKRQ
QQPGQPHCSSEQEMKRQEEGDSSSNPESQESDDSLELSDGEGEEQEEARGGGGGGGGGGG
GDGDGGGRIGRLAGLGGLGGLGAIGGLSNLGGLHIKVEHYGEGEEVQLHNSQTSSSEEEE
EEEDDDDEEEEDGGVQDCDSNAGIKLQKRRKRRKVQKWDGSRSRRLRLSSPTTPSPVAMG
DTTTLVDSSQATSANSSHLLASNGSPNGAGATSSVLKIKTEMAEPINFDNDSSIWNFPPN
REISRNESPYSMTSKPVAPGSHENFPSPQGAIPDSVLTPPGTEGGAGGVRKPPYNGSSAP
SSISSAASLAPPSSASSADPLSPPLSASPRDKQQGTPTTSSSSSSSSSSSTSSSSLLYSG
DLEALQRLQAGNVMLPLVHRVTGTLASTSTTAPRVYTTGTIRYAPADVTLAMAQGNLLPN
AAMNFVDGSGFGLDPKTPMEMLYHHVHRLNMSAAAAAGPFVGSPTVTGGNGALGGQMPTA
ANVFTTAEGLFSTLPFPVYSNGIHATQAALERKED
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgatcaggatcttcccggatttcagcgtccaggtgacggcttcgggagccggaggagga
ggcggcggaggcgggatggtgacgggccccccggtgggtcgggtccccggagccaccaac
gggtccccgcagagcatgcagggaatcaccgcctaccagcaaagtgacccctactgggag
cggccggctaatgcaggcagctgctccgccgcccggcccaagacgcttcacctggccggc
cagcagcatacctcgtcaccatggctgcaggctctgaggaaggagaagtctcgggacgcg
gcgcggtcgcggcgggggaaggagaactttgagttttacgaactggccaagatgctgccg
ctgccgggcgccatcaccagccagctggacaaggcctccatcatccggctcaccatcagc
tacctgaagatgagggacttcgccaaccagggggacccgccgtggaacctgcggatggag
ggaccgccgcccaacacctccgtcaaagctatcggtgcccagagaaggaggacacacagc
ggcgtcgcctcggagatcttcgagcctcacctgggcagccacattttacagtctctggac
gggttcgtatttgcactaaacaaagagggacgcttcctctacatctctgagaccgtctcc
atctacctgggactgtcacaggtggagctgaccggcagcagcgtctttgactacatccac
cccggcgatcacgtggagatggcggagcagctcggcatgaagcttcctccgggccgaggc
ttgtctctgtcccagggagccgtcaacgaggacggggcgtcatcggcctcgtcgtcctcg
cactctgagacgcccgaaccagtggagtccagcagtcccagtcttctggcccccgataac
cttctggaacgatccttcttcgtcaggatgaagtccacgctcacaaagagaggagtgcac
atcaagtcctcaggatacaaggtgatccacgtaacggggcgtcttcggatccggatgacg
ttgacgcacagccgctcggtgcccaatcagatcatggggatggtggtggtggctcacgcc
ctcccgccgccgaccatcaacgaggtccgcatcgactgtcagatgttcgtcacccgagtc
aacatggacctgaagttcatctactgcgagaacagggtcagcgactacatggacctgacg
ccggtggacattgtggggaagaggtgctaccagttcattcatgctgaagacgtggaggga
atcagagagtgtcacctggacttgatgaacaagggtcagtgtgtgacaaagtactaccgg
tggatccagaagaacagcgggtacatctggatccagtccagcgccaccctcgccatcaac
gccaagaaccccaacgagaagaacgtcatctgggtgaactacgtcctcagtatgcacgag
tataaagacacgcccatggacatcgcccagctgcccaacctgcccgagaaaacctcagag
tcctcggaaacctccgactccgagtccgagtccaaagaaaactctgacaatgagaaatcc
gagggaaagcccggccgccaatcagaacgcgaggacccggagacggacagcaagcgtcag
cagcaacccggccaaccacactgctcctccgaacaggaaatgaagcgccaggaggaagga
gacagctcgagtaaccccgagagccaggagagcgacgacagtctggaactctcagatggg
gagggggaggagcaggaggaggcaaggggaggaggaggtggaggaggaggaggtggaggt
ggagatggagatggaggaggaaggattgggaggttagccggactaggagggttaggtgga
cttggcgccattggaggactgagcaatctgggcgggcttcacattaaagtcgaacactac
ggagaaggggaagaagtacagctgcacaactcacaaacttcttcatcagaggaggaggaa
gaagaggaggacgacgatgacgaggaggaagaagacggaggcgtgcaagattgcgacagc
aacgccggcatcaagctccagaagaggcggaagaggaggaaagtgcagaaatgggacgga
tcccgaagccggaggctccgtctctcctcgcccaccaccccaagccccgtcgccatggga
gataccacgacgctggtcgactcctcccaggccacgtcagccaactcctcccacctcctc
gcctccaacggctccccgaacggcgcgggtgcgacctcctcggtcctgaaaatcaagacg
gaaatggcggagccgatcaacttcgacaacgacagcagcatctggaacttcccgcccaac
agagagatttccagaaacgagtccccgtacagcatgacctccaagccggtggctccgggg
agccacgagaacttcccctcgccacagggagcaatccccgactccgtcctcacccctcct
gggaccgagggaggcgcaggaggagtgaggaagcctccttacaacggaagctcggcgccg
tcctccatttccagcgccgccagtttagcccctccctccagcgcctcctccgccgacccc
ttgtcccctccgctatccgcctccccgcgggacaaacagcaaggcacccccaccacctcc
tcttcctcctcctcctcctcgtcctcgtcgacctcttcctcgtcactgctgtactctggc
gacctcgaggcgctgcagcgtctgcaggccggtaacgtgatgctcccgttggtccaccgg
gtcacggggactctggcctccaccagcacgacggctccacgggtctacaccaccgggacc
atcaggtacgcaccggcggacgtcaccctcgccatggcgcaaggcaacctcctccccaat
gccgccatgaactttgtcgacggctcggggttcggcctggacccgaagacgcccatggag
atgctgtaccaccacgtccacaggctcaacatgtcggcggcggcagcggccggcccgttc
gtcgggtctccgacagtcacgggcgggaacggcgccctcggaggccagatgccgacggcg
gccaacgtcttcaccacagccgagggacttttctcgacgctaccgttcccggtgtacagc
aacgggatccacgccacgcaggcggctctggagaggaaggaggattaa
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