Anoplopoma fimbria (sablefish): 129104192
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Entry
129104192 CDS
T09102
Symbol
mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
129104192 (mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129104192 (mid1)
Enzymes [BR:
afb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129104192 (mid1)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
129104192 (mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
PRY
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4
FN3_DSCAM-DSCAML_C
TRIM_CC
zf-C3HC4_3
zf-RING_2
Pur_ac_phosph_N
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
129104192
NCBI-ProteinID:
XP_054470724
LinkDB
All DBs
Position
16:11550486..11575793
Genome browser
AA seq
689 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPSEPIHSISAFQCPTCR
YVITLNQRGLEGLKRNVTLQNIIDRYQKASLSGPNSPNETRRERAVPDSKAMTCPGDRVQ
CQFCEQDPPQEAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPLLDSHLRGLMCLEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHHVAALGDRFDKLKKSSGRSLCVVGRGHSHQE
EDQQALDSNLSSLIKRTSELESLMGKLIQTCQNVELNASRQENKLLEECDLLINIIQQRR
QIIGTKIKEGKSMRLRKLAQQIASCKQCIERSSSLITQADQTLKETDHTRFLQTAKSTCE
RVSMATASSQIFLPEINLNDTFDTFALDFTREKKMLESLDYLTAPNPPVIREELCTASYD
TITVHWTSDDEFSVVSYELQYAIFTSQSNVVSLCNSADSWMIVPNIKQNHYTVHGLQCGT
KYIFLVKAINQAGSRSSEPGKLKTNSQPFKLDPKSAHRKLRVSHDNLTVERDETSSKKSH
SQDRFSTHSSYGVTGNVYIDSGRHYWEALIGGSSWFAVGIAYKSAPKHEWVGKNSSSWVL
SRCNNSWVVRHNSKEMPIEPSPHLRRLGVLLDYDTGSLSFYDAVGTQHLHTFDISFAQPV
CPVFNVWNRCLTVLTGLPIPDHLEGTDYN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgctggagtctgaactgacctgcccaatctgtctggagctcttcgaggacccg
ctgctcttgccctgcgctcacagcctttgtttcaactgtgcccatcgtattctggtctca
cactgcacgcccagcgagccaattcactccatcagcgcctttcagtgcccgacctgtcgc
tatgtcatcaccctcaaccagaggggcctagagggactcaaacgcaacgtaacattacag
aacatcatcgaccgctaccagaaggcttctctaagcggacctaattctcctaacgagacc
cggcgcgagcgcgccgtccccgacagcaaagccatgacttgtcccggtgaccgggtgcag
tgtcagttctgtgagcaggatcctcctcaggaggccgtgaagacctgcgtcacctgtgag
gtgtcatactgtgacgagtgtctcaaggccacccaccccaacaagaagcctttcacgggc
caccgtctaatcgagcccctgcttgactcccatctgcgagggcttatgtgtcttgagcat
gaggatgagaaggtcaacatgtactgtgtgacagatgaacagttgatctgtgcattgtgt
aagctggttggccgacaccgggaccaccacgttgcagccctcggtgaccgatttgacaaa
ctcaagaaatcttctggccgctctctctgtgtggtggggcgtggtcattcacaccaggag
gaggaccagcaagctttggattccaacctaagcagtctaatcaagaggaccagtgagttg
gaaagtcttatggggaaactcatccaaacctgccaaaatgtggagctaaatgcgtcccga
caagaaaacaagctgctggaggagtgtgacctgctgattaatatcatacagcaacggaga
caaatcataggaaccaagataaaggagggaaagtctatgcggctgaggaagctagcccag
cagatagccagctgcaagcagtgcatcgagaggtcttcctccctcatcactcaggccgac
caaactctcaaggagacggaccacactcgcttcctccaaacggctaaaagcacctgtgag
agagtttccatggcaacggcctcctctcaaatctttttaccagaaatcaacctgaatgac
acctttgatacttttgctttggacttcacaagggagaaaaaaatgcttgaaagcttggat
tacctcacagcaccaaatccaccagtaatccgtgaggaattatgtacagcttcatacgac
acgatcacagttcactggacatcagatgatgaattctctgttgtatcatatgaacttcag
tacgccatcttcaccagccaatccaatgttgtcagtttgtgtaactctgctgacagctgg
atgattgtaccaaacatcaagcaaaatcactacactgtccacgggctccagtgtggcacc
aagtacattttcttagtgaaggccataaaccaggctggaagccgcagcagtgaaccaggg
aaactcaagaccaacagtcaaccattcaagttagacccaaaatcagctcaccggaagctg
agggtgtcccatgacaacctgacagtggagagagacgagacgtcatccaagaagagccac
agccaggaccgcttctccacccacagcagctatggtgtcacaggaaatgtctacattgac
agcggccgccattactgggaagctctgattggaggaagctcatggtttgcagtgggcatt
gcatacaagtcagcaccaaaacatgagtgggtcggcaaaaactcttcctcctgggtactg
tctcgatgcaacaactcgtgggtggtgcgccacaacagtaaggagatgcccatcgagccc
tcaccccacctgcgtcgtctcggagtgctgttggactatgacactggatctctgtcattc
tacgacgctgtcggcactcagcacttgcatacattcgatatctccttcgctcagccagtc
tgcccagtgttcaatgtgtggaacaggtgtttaacggtcctcaccggactgcccatccca
gatcacttagaggggacagactacaactga
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