Anoplopoma fimbria (sablefish): 129104366
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Entry
129104366 CDS
T09102
Symbol
itga4
Name
(RefSeq) integrin alpha-4
KO
K06483
integrin alpha 4
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04510
Focal adhesion
afb04512
ECM-receptor interaction
afb04514
Cell adhesion molecules
afb04672
Intestinal immune network for IgA production
afb04810
Regulation of actin cytoskeleton
afb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129104366 (itga4)
04514 Cell adhesion molecules
129104366 (itga4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129104366 (itga4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129104366 (itga4)
04810 Regulation of actin cytoskeleton
129104366 (itga4)
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
129104366 (itga4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129104366 (itga4)
04515 Cell adhesion molecules [BR:
afb04515
]
129104366 (itga4)
04090 CD molecules [BR:
afb04090
]
129104366 (itga4)
Exosome [BR:
afb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
129104366 (itga4)
Exosomal proteins of other cancer cells
129104366 (itga4)
Cell adhesion molecules [BR:
afb04515
]
Integrins
Integrin alpha subunits
129104366 (itga4)
CD molecules [BR:
afb04090
]
Proteins
129104366 (itga4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_1
FG-GAP
Integrin_A_Ig_2
Integrin_A_Ig_3
FG-GAP_3
Motif
Other DBs
NCBI-GeneID:
129104366
NCBI-ProteinID:
XP_054471000
LinkDB
All DBs
Position
16:complement(1071586..1093441)
Genome browser
AA seq
1033 aa
AA seq
DB search
MRPSVGSMCARCSLVLVQVLVLVLVHPAAGYNLDQDHSLDFSGPSSSMFGYSILLHRHGS
HSWLVVGAPEANSSSSPSVRSPGAVYRCNITAHSRSCHPMHADVLRCGKTCDAESDHQWL
GVSLSRQPGVNGGHILACAHRWKNVFYSKKDSQNHKLPNGVCYRYGNDLRHAQPIIPCYR
DHQRKFGEDYGSCQAGISNFLTEDLIIMGAPGTSYWTGSVLVFNTSSGGMSVYLDDDTGA
VSFGSYLGYAVGAGSFLSPGSVEVVGGAPQYNQKGKVFIFTVDRNMLRVVSEVSGKELGS
YFGSSVCAVDLNADGLSDLLVGAPMTTGVTREEGRVHVYINQGKAKLLEAEFQLSGSDAY
AARFGETIADLGDLDDDGYPDVAVGAPQEDDLKGAVYIYNGREEGISPTPSQRITGSTLG
RNLRMFGQSLNSGIDIDDNGYQDVAVGAFLSDSAVVLRTRPVIQVKASLILPEQIDQRLA
LCQEHKTPTVCFNVTICFSAKSRQFRGAIDLQYNLTSDLLHKPSFPHRFYFPGNGSSNST
TGHVKAQQGQPTCITHVAYQRKDVRDIFTPVKFEVSYSHRGETNAHRHSSKTFPPLKPIL
QQSTGHQNTITNQTWFARSCSLVNCSTNMQLSAQLVLPHQQQYFALGSGQTIMLKTSLLN
SGDDAFLPRLTLRFPDNIHYIKVLQNEDNVVSCDVTQEVNSTTAVVDCSVTSLLLSANSQ
LNINFLLDVNQNSTPGDTTIHVNISSDNYEREEYLHDNSVSLLLPLKYEVNVNIHGFVSP
NSFVFGDEDTTPVDCYSEKFNYTYKVLNSGSSRSVDTVVDVALPKILTPNRHRLLQVVDW
QSSHGVCSISDTTVSVLEDCDVPQASFIKQLVFFFSSTSTRRMFCGRGDELCERLVCRLG
NLEAGREAVIQLEIRLNPAVLLQAPGRHGVMRLESTATLSNPREGPHTILIPAQPSAQVV
VEALFTQKPSTTVKVFIIVVSLVLGLMILAALIWCLWKAGFFKREFQKKEEEEEFKRDSW
DYVPKNNKRESTS
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccctcagtgggcagcatgtgtgcgcgctgcagcctggtcttggttcaggtcctg
gtccttgtcctggttcatcctgcagcaggatacaatctggatcaggaccacagtctggat
ttcagcggcccctcctcatctatgtttggatactcaatcctgctgcatcgccatggatcc
catagctggttggtggtcggagccccggaggcaaactcatcctccagcccgtctgttcga
tctccaggagctgtttaccgctgcaacatcactgctcattcccgcagctgccatcccatg
cacgctgacgtgctgagatgtgggaagacgtgtgatgcagagagtgatcaccaatggctg
ggagtcagtctgtccagacaacctggagtcaacggaggacacatcctggcatgtgctcac
cgctggaagaacgtcttctactcaaagaaagacagccagaaccacaaactgcctaacgga
gtctgttatcgctacggcaacgacctgagacacgcccagcccatcattccctgctacaga
gaccaccagaggaagtttggtgaggattatgggtcgtgtcaggccggcatttccaacttc
ctgacagaggatctgatcatcatgggggccccggggacgtcttattggacgggttcagtt
ctggtctttaacacgtccagcggagggatgtcggtgtacctggacgacgacaccggagcc
gtcagctttggaagctacctaggttacgctgttggagccggttcctttttgagtcctggt
tctgtggaggtggtgggtggagctccacagtacaaccagaagggcaaggtcttcatcttc
actgttgaccgcaacatgctgcgagtcgtctctgaggtgtccggaaaagagctgggatct
tacttcggctccagtgtgtgtgccgtggatctgaatgctgatggtttgtcggatctgttg
gtcggcgctcccatgacaacaggggtcactagggaggagggaagagtccatgtgtacatc
aaccaggggaaggcgaagctgttggaggcggagtttcagctgagtggcagcgatgcctac
gctgcccggtttggagagactatcgccgacctgggagacctagacgacgacggttatcct
gatgtggcggttggtgccccacaggaagacgacctaaaaggagccgtctacatttacaat
ggaagggaggagggcatctcaccaactccatctcagaggattactggatccactctgggt
cgtaacctcaggatgttcggccagtcgctcaactctggcattgacattgatgataacggc
taccaagatgtggcggttggtgctttcctctcggactctgctgtggttctcaggacccgt
ccggtgattcaggtgaaggcttctctgattctgcccgagcagattgaccagcggctggcg
ctgtgccaagaacacaagactccaactgtctgcttcaatgttaccatctgcttcagtgcc
aagtccagacagttcagaggagctatagatcttcaatataatttgacctctgacctcctc
cacaaaccgtccttccctcatcgtttctatttccctggcaacgggtcatcaaatagcaca
acggggcatgtgaaagcccaacaaggccagcccacttgtattacacatgtggcttatcaa
aggaaagatgtgagggacatttttactccggtcaagtttgaggtttcctacagtcacaga
ggagaaacaaacgcccacagacactcttctaaaaccttccctccattaaaacccattctc
cagcagagcacaggacaccagaacactatcaccaaccagacttggtttgctcgttcctgt
tctctggtgaactgttcgaccaacatgcagttgtctgctcaactagtgctgccacatcag
cagcagtactttgctctcggctctggacagacgatcatgttgaaaacctcgcttctgaac
tccggagacgacgctttcctgccacgactgactctgcgtttccctgacaacatccactac
attaaagtactgcagaacgaggacaatgtggtcagttgtgatgtcacacaggaagtcaac
agtacaacagcagttgttgactgcagcgtcaccagcctcctcctctcagccaacagccag
ttgaatatcaacttcctattggacgtcaaccagaacagcacacctggtgacaccaccatt
catgtcaacattagcagcgataactatgagagggaagagtatctccatgacaactctgtc
agcctgctccttcctctcaaatatgaagttaatgttaacatccacggttttgtgtctccc
aactcatttgtgtttggagatgaagacacgactccagttgactgctactctgaaaaattc
aactacacatacaaggtgttaaactctggttccagcaggtctgtagatactgtggttgac
gtcgcgctaccgaagatcctcacacctaaccgacaccgactgctgcaggtggtggactgg
cagtcgtctcacggtgtgtgttcgatcagtgacacgactgtttcagtcctcgaggactgt
gatgtgcctcaggcttccttcatcaaacagctcgtcttcttcttctcctccacctccacc
cgcagaatgttttgtggccgtggtgatgagctgtgtgagcggttggtgtgtcgtctcggt
aacctggaggcggggagagaggccgtcatccaactggagatcagactgaaccctgctgta
ctactccaagctccgggtcgtcacggtgttatgaggctggagagcacagcaacgctgtca
aatcccagagaaggtcctcacaccatcctcatccccgcacaaccttcagcacaggtggtg
gtagaagctctttttacccagaaaccctcaacaacagtgaaagtcttcatcatcgtcgtc
agtttagttttgggtctgatgatcctggctgctctcatctggtgtctgtggaaggctggt
ttctttaagagagagttccagaagaaagaagaagaggaggagttcaagagagacagctgg
gactacgtccctaaaaacaacaaaagagagagcacctcataa
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integrated database retrieval system