KEGG   Anoplopoma fimbria (sablefish): 129104366
Entry
129104366         CDS       T09102                                 
Symbol
itga4
Name
(RefSeq) integrin alpha-4
  KO
K06483  integrin alpha 4
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb04510  Focal adhesion
afb04512  ECM-receptor interaction
afb04514  Cell adhesion molecules
afb04672  Intestinal immune network for IgA production
afb04810  Regulation of actin cytoskeleton
afb04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:afb00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    129104366 (itga4)
   04514 Cell adhesion molecules
    129104366 (itga4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    129104366 (itga4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    129104366 (itga4)
   04810 Regulation of actin cytoskeleton
    129104366 (itga4)
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    129104366 (itga4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:afb04147]
    129104366 (itga4)
   04515 Cell adhesion molecules [BR:afb04515]
    129104366 (itga4)
   04090 CD molecules [BR:afb04090]
    129104366 (itga4)
Exosome [BR:afb04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   129104366 (itga4)
  Exosomal proteins of other cancer cells
   129104366 (itga4)
Cell adhesion molecules [BR:afb04515]
 Integrins
  Integrin alpha subunits
   129104366 (itga4)
CD molecules [BR:afb04090]
 Proteins
  129104366 (itga4)
SSDB
Motif
Pfam: Integrin_A_Ig_1 FG-GAP Integrin_A_Ig_2 Integrin_A_Ig_3 FG-GAP_3
Other DBs
NCBI-GeneID: 129104366
NCBI-ProteinID: XP_054471000
LinkDB
Position
16:complement(1071586..1093441)
AA seq 1033 aa
MRPSVGSMCARCSLVLVQVLVLVLVHPAAGYNLDQDHSLDFSGPSSSMFGYSILLHRHGS
HSWLVVGAPEANSSSSPSVRSPGAVYRCNITAHSRSCHPMHADVLRCGKTCDAESDHQWL
GVSLSRQPGVNGGHILACAHRWKNVFYSKKDSQNHKLPNGVCYRYGNDLRHAQPIIPCYR
DHQRKFGEDYGSCQAGISNFLTEDLIIMGAPGTSYWTGSVLVFNTSSGGMSVYLDDDTGA
VSFGSYLGYAVGAGSFLSPGSVEVVGGAPQYNQKGKVFIFTVDRNMLRVVSEVSGKELGS
YFGSSVCAVDLNADGLSDLLVGAPMTTGVTREEGRVHVYINQGKAKLLEAEFQLSGSDAY
AARFGETIADLGDLDDDGYPDVAVGAPQEDDLKGAVYIYNGREEGISPTPSQRITGSTLG
RNLRMFGQSLNSGIDIDDNGYQDVAVGAFLSDSAVVLRTRPVIQVKASLILPEQIDQRLA
LCQEHKTPTVCFNVTICFSAKSRQFRGAIDLQYNLTSDLLHKPSFPHRFYFPGNGSSNST
TGHVKAQQGQPTCITHVAYQRKDVRDIFTPVKFEVSYSHRGETNAHRHSSKTFPPLKPIL
QQSTGHQNTITNQTWFARSCSLVNCSTNMQLSAQLVLPHQQQYFALGSGQTIMLKTSLLN
SGDDAFLPRLTLRFPDNIHYIKVLQNEDNVVSCDVTQEVNSTTAVVDCSVTSLLLSANSQ
LNINFLLDVNQNSTPGDTTIHVNISSDNYEREEYLHDNSVSLLLPLKYEVNVNIHGFVSP
NSFVFGDEDTTPVDCYSEKFNYTYKVLNSGSSRSVDTVVDVALPKILTPNRHRLLQVVDW
QSSHGVCSISDTTVSVLEDCDVPQASFIKQLVFFFSSTSTRRMFCGRGDELCERLVCRLG
NLEAGREAVIQLEIRLNPAVLLQAPGRHGVMRLESTATLSNPREGPHTILIPAQPSAQVV
VEALFTQKPSTTVKVFIIVVSLVLGLMILAALIWCLWKAGFFKREFQKKEEEEEFKRDSW
DYVPKNNKRESTS
NT seq 3102 nt   +upstreamnt  +downstreamnt
atgcgtccctcagtgggcagcatgtgtgcgcgctgcagcctggtcttggttcaggtcctg
gtccttgtcctggttcatcctgcagcaggatacaatctggatcaggaccacagtctggat
ttcagcggcccctcctcatctatgtttggatactcaatcctgctgcatcgccatggatcc
catagctggttggtggtcggagccccggaggcaaactcatcctccagcccgtctgttcga
tctccaggagctgtttaccgctgcaacatcactgctcattcccgcagctgccatcccatg
cacgctgacgtgctgagatgtgggaagacgtgtgatgcagagagtgatcaccaatggctg
ggagtcagtctgtccagacaacctggagtcaacggaggacacatcctggcatgtgctcac
cgctggaagaacgtcttctactcaaagaaagacagccagaaccacaaactgcctaacgga
gtctgttatcgctacggcaacgacctgagacacgcccagcccatcattccctgctacaga
gaccaccagaggaagtttggtgaggattatgggtcgtgtcaggccggcatttccaacttc
ctgacagaggatctgatcatcatgggggccccggggacgtcttattggacgggttcagtt
ctggtctttaacacgtccagcggagggatgtcggtgtacctggacgacgacaccggagcc
gtcagctttggaagctacctaggttacgctgttggagccggttcctttttgagtcctggt
tctgtggaggtggtgggtggagctccacagtacaaccagaagggcaaggtcttcatcttc
actgttgaccgcaacatgctgcgagtcgtctctgaggtgtccggaaaagagctgggatct
tacttcggctccagtgtgtgtgccgtggatctgaatgctgatggtttgtcggatctgttg
gtcggcgctcccatgacaacaggggtcactagggaggagggaagagtccatgtgtacatc
aaccaggggaaggcgaagctgttggaggcggagtttcagctgagtggcagcgatgcctac
gctgcccggtttggagagactatcgccgacctgggagacctagacgacgacggttatcct
gatgtggcggttggtgccccacaggaagacgacctaaaaggagccgtctacatttacaat
ggaagggaggagggcatctcaccaactccatctcagaggattactggatccactctgggt
cgtaacctcaggatgttcggccagtcgctcaactctggcattgacattgatgataacggc
taccaagatgtggcggttggtgctttcctctcggactctgctgtggttctcaggacccgt
ccggtgattcaggtgaaggcttctctgattctgcccgagcagattgaccagcggctggcg
ctgtgccaagaacacaagactccaactgtctgcttcaatgttaccatctgcttcagtgcc
aagtccagacagttcagaggagctatagatcttcaatataatttgacctctgacctcctc
cacaaaccgtccttccctcatcgtttctatttccctggcaacgggtcatcaaatagcaca
acggggcatgtgaaagcccaacaaggccagcccacttgtattacacatgtggcttatcaa
aggaaagatgtgagggacatttttactccggtcaagtttgaggtttcctacagtcacaga
ggagaaacaaacgcccacagacactcttctaaaaccttccctccattaaaacccattctc
cagcagagcacaggacaccagaacactatcaccaaccagacttggtttgctcgttcctgt
tctctggtgaactgttcgaccaacatgcagttgtctgctcaactagtgctgccacatcag
cagcagtactttgctctcggctctggacagacgatcatgttgaaaacctcgcttctgaac
tccggagacgacgctttcctgccacgactgactctgcgtttccctgacaacatccactac
attaaagtactgcagaacgaggacaatgtggtcagttgtgatgtcacacaggaagtcaac
agtacaacagcagttgttgactgcagcgtcaccagcctcctcctctcagccaacagccag
ttgaatatcaacttcctattggacgtcaaccagaacagcacacctggtgacaccaccatt
catgtcaacattagcagcgataactatgagagggaagagtatctccatgacaactctgtc
agcctgctccttcctctcaaatatgaagttaatgttaacatccacggttttgtgtctccc
aactcatttgtgtttggagatgaagacacgactccagttgactgctactctgaaaaattc
aactacacatacaaggtgttaaactctggttccagcaggtctgtagatactgtggttgac
gtcgcgctaccgaagatcctcacacctaaccgacaccgactgctgcaggtggtggactgg
cagtcgtctcacggtgtgtgttcgatcagtgacacgactgtttcagtcctcgaggactgt
gatgtgcctcaggcttccttcatcaaacagctcgtcttcttcttctcctccacctccacc
cgcagaatgttttgtggccgtggtgatgagctgtgtgagcggttggtgtgtcgtctcggt
aacctggaggcggggagagaggccgtcatccaactggagatcagactgaaccctgctgta
ctactccaagctccgggtcgtcacggtgttatgaggctggagagcacagcaacgctgtca
aatcccagagaaggtcctcacaccatcctcatccccgcacaaccttcagcacaggtggtg
gtagaagctctttttacccagaaaccctcaacaacagtgaaagtcttcatcatcgtcgtc
agtttagttttgggtctgatgatcctggctgctctcatctggtgtctgtggaaggctggt
ttctttaagagagagttccagaagaaagaagaagaggaggagttcaagagagacagctgg
gactacgtccctaaaaacaacaaaagagagagcacctcataa

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