Anoplopoma fimbria (sablefish): 129104417
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Entry
129104417 CDS
T09102
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a
KO
K06823
collagen type XVIII alpha
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129104417 (col18a1a)
00535 Proteoglycans [BR:
afb00535
]
129104417 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
afb00536
]
129104417 (col18a1a)
Exosome [BR:
afb04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
129104417 (col18a1a)
Proteoglycans [BR:
afb00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
129104417 (col18a1a)
Glycosaminoglycan binding proteins [BR:
afb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129104417 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
129104417
NCBI-ProteinID:
XP_054471066
LinkDB
All DBs
Position
16:7032939..7109176
Genome browser
AA seq
1352 aa
AA seq
DB search
MTMRCSSWLERLLCCVLILVGSAASPWPEDTGLSLLQLIGDPPPNTIPRVYGPDSIPSYV
FGPEANTGQMARAHLPNPFYRDFALIFNLKPTSERGGVIFSVTDTLQKIMYVGVKLSDVQ
GGNQNVILYYTEPDSQKSYEAARFLVPSMMDTWTRFAIAVRDDKVKFYLNCDTVPLVKRI
ERSPDEMELQAGAGVFVGQAGGADPDKFLGVISELRVVGDPRAAEMPCEEDDDDSDMASG
EGSGYRETRPLQPAVENRRMTTPTPPSRPIPQPPLTRKEEVSMERETGPAGASGEKGDRG
DAGMKGDRGPIGPKGDAGSGSSSRGGARGEKGEPGEKGFKGSAGFGYQGKKGDSGPPGPP
GSPGPPGPSTEFSVGSDGLVSPRVPGPRGPAGPQGAAGPQGPPGADGEPGDPGEDGKIGP
EGPPGFPGTPGDSGHKGDKGDRGDGQPGPRGPPGLPGPPGPGLRSTFVDMEGSGFPDLES
VRGFPGLPGPPGPPGPPGPANPSTAGAASSSGAFGPPGKDGAPGQPGMPGLPGTDGRPGV
SGPKGGKGDSGDLGLPGAVGQKGTPGNPGLPGTSGDTGLAGLPGPIGPVGQPGPPGPPGP
SYRVGFDDMEASGGGFSNGLPGVSGPEGRQGSPGMPGLPGKDALPGMPGQKGNEGVTGKD
GRPGLDGFPGPQGPKGDSGNKGERGDPGRDGSSLPGPPGPPGPPGQIIYQTSSNVDGVVG
NAGPQGGDGLPGQAGFPGPIGPKGDRGDPGLPGYGIKGEKGEPGQIIGPDGNLLHQEGLA
GSKGDRGSPGPVGPPGQYGPTGIKGEIGMPGRPGRPGVNGYKGEKGETGVGYGYPGVPGQ
PGPPGPPGPAAPLDRFNRYDETSRNYPATKGEKGERGDKGLPGIPGTATNLDIYTLKNEL
KGQSGDPGVKGEKGEPGGGYYDPRFGGVQGPQGPPGKPGLEGPKGEAVLGPPGPQGPPGT
PGIGYDGRPGPPGPPGPPGPQGSSSLPGAYRPNPSLNLPGPPGPPGPPGTPGHSSGITVL
RSYDTMIATARRQTEGSLIFILDKADLYLRVRDGLRQVMLGDYSPFFRDLENEVAEVQPP
PVILYPQSQDQSHNNGAGHYSQGGSAIRPIEPPPHPPVDPRYPPQYDPRFPDPKHTGQTD
GRLATQQTENRYPVTPQRRPSPPVPQPAGHVDPTASGLHLIALNAPQTGNMRGIRGADFL
CFQQARAVGLKGTFRAFLSSKLQDLYTIVRRSDRDSTPIVNLKDQVLFSSWESIFTDDAS
KMRENVPIYSFDGRDIVRDSAWPEKMVWHGSSNKGHRQTDHYCETWRAGDHAVTGLASSL
QSGKILQQTSSSCSGSYIVLCIENALASHSKK
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgaggtgttcctcatggctggagcgccttctctgctgcgtccttattcttgtc
ggctcggctgcatcgccatggccagaagacactggactctctctgctacagctgattggg
gatcctcctccaaatacgatcccccgggtctatgggcccgacagcatccccagctatgtc
tttggccctgaagccaacacgggacagatggcccgtgcccacctgccgaacccattctac
cgagacttcgccctcatcttcaacctgaaacccacctctgaacggggcggcgtcatcttc
tccgtcacagataccttacagaagatcatgtatgtgggtgttaaactgtcagacgtgcag
ggcggcaaccagaatgtcatcctgtactacacggagcccgactcgcagaagtcgtacgag
gcggccaggttccttgtgccctccatgatggacacctggactcgttttgccatcgctgtg
agggatgacaaggtgaagttctacctcaactgtgacacggttcctttggtgaaacgcatt
gagaggtccccggacgagatggagctgcaggccggtgctggggtctttgtcgggcaagct
ggaggagctgatcctgacaagtttctgggggtgatcagcgagctgagggtggtgggagac
cccagagctgccgagatgccctgtgaagaggatgacgacgactcagatatggcttcaggt
gaaggaagcggctacagagaaaccagacccctacagccagctgtggagaaccgtagaatg
acgactcctactccaccttcccggcccattccgcagccaccactgaccaggaaagaggag
gtgtcaatggaaagagaaacaggtccagctggtgcttcaggagaaaagggtgaccggggg
gatgcaggaatgaaaggagacagaggtccgattgggccgaagggagatgctggctctggc
tccagctcacgaggtggagcccgtggagagaagggagaaccaggggaaaagggatttaag
ggcagtgcaggcttcggctaccaaggaaagaaaggagactccggcccccccggaccacct
ggttcccccggccctccaggaccatcaacagagttctcagttggcagtgacggcttagtt
tctcccagagtccccggaccccgaggaccggccggaccacaaggtgctgcgggcccccag
ggaccaccaggagctgatggagagccaggggatcctggtgaggatggaaaaatcggacct
gaaggaccaccaggcttcccaggaaccccaggtgactctggacataaaggagataaggga
gaccgtggagatggtcagcctggtcccaggggacccccaggacttcctggacccccagga
ccaggactcagatctacttttgttgacatggaaggctctgggttccctgatctggaatcc
gttcggggattccctggtctaccaggtccacctggtccccccggtccccccggtcctgct
aatccctctacagcaggagcagcatcgagttctggggcattcggaccaccaggaaaggac
ggagcgcccggtcaacctggcatgcctggtttgccgggtactgatggccgcccaggagtt
tctggtccaaagggaggaaagggtgattcaggcgatctgggtcttccaggagcagttgga
cagaagggaactccaggaaaccctggtttaccgggaacctcaggagacactggactggct
ggtctgcctggacccatcggaccagttgggcaaccagggcctcctgggcctcctggacca
agctatcgtgttggatttgatgacatggaggcctctggtggaggtttcagcaatggactg
cctggtgtcagtggacctgagggaagacagggttctcctggcatgcctggacttccgggc
aaagatgcgttgcctggaatgccaggacagaagggcaatgaaggtgtcacaggaaaggat
ggacgtccagggttggatggcttccctggtcctcagggaccaaagggtgacagtggcaac
aaaggagagaggggtgatccaggtcgagatggatccagtctcccagggccacccggccca
cctggaccaccaggacaaatcatctaccagacatctagcaatgttgatggtgttgttggc
aatgctgggcctcagggaggagatggtttacctggccaagctggattccctggtcctatt
gggccaaagggtgacagaggagaccctggccttccaggctacgggatcaagggtgagaaa
ggtgaaccaggccaaataatcggacctgatggaaaccttctgcatcaggaagggctggcg
ggttcgaagggagacagaggatcacctggacctgttggaccccctggccagtacgggccg
actggaataaagggtgaaattggaatgcctggtagacctggtcgccctggtgtaaatggg
tacaagggtgagaaaggagagacaggagttggctatggctacccaggagtccccggccag
ccgggaccacctggaccccctggaccagccgctcccttagaccgcttcaatcgctatgat
gaaacttcaaggaattacccagcaaccaaaggggaaaaaggagagcgtggggacaaagga
cttccaggaatcccaggaacagccactaatttggatatttacacgctcaagaatgaactg
aagggacagagcggagacccaggtgtgaagggagaaaagggagagcctggtggcggatat
tatgacccacgttttggaggagtacaaggcccgcaaggtcctcctggaaaaccaggtcta
gaaggtccaaagggagaagctgtattgggccctcctgggccccaggggccaccagggacg
ccagggattggttatgatgggcgtccaggtcctccaggaccacctggacctccaggaccc
caaggatcttcctcacttccaggagcatacaggcccaatccctccctcaatcttcctgga
cctcctggtcctcctggtccgcctggaactcccggtcactcttctgggattactgttttg
aggtcatatgacaccatgatagctactgcgagacgccagacggagggcagcctcatcttc
atccttgacaaagcagacctctatttgagagtgcgcgatggactgcggcaagtcatgctt
ggagactacagtcccttcttcagagatctggagaacgaggtggcagaggtccagcctcca
cctgtgatcctgtacccccagtcccaggaccagtcccacaacaacggagctggccattac
tcccaggggggttcagccataagacccattgagcctccaccacacccgcctgtagacccc
agataccccccacagtatgatcccaggttcccagacccgaaacacacaggccagacggat
gggagattagccacccagcagactgagaacagatacccggtaactccacagcgacgaccc
agcccacctgtaccgcagcctgccggccatgtggacccaacagcatcaggactacacctc
atcgccttgaacgcccctcaaaccggtaacatgcgagggatccgcggggccgacttcctg
tgcttccagcaggcccgcgctgtgggcctgaaggggacattcagagctttcctgtcctcc
aagctccaagacctctacaccatcgtccgcaggtcggacagggacagcacccccatcgtg
aacctcaaggaccaagtgttgttcagcagttgggagtctatcttcactgacgatgcgagc
aaaatgagggagaatgtaccgatctactccttcgatggtagagacatcgtcagggacagc
gcatggccagagaaaatggtctggcatggatcaagcaacaaaggccaccggcaaacagac
cactactgtgaaacatggcgggcgggcgaccacgctgtgactggtctggcgtcttcacta
cagagcggcaaaatcctgcagcaaacctccagcagctgctccggctcctacatcgtcctc
tgcatcgagaacgccctcgcatcacactccaaaaaataa
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