Anoplopoma fimbria (sablefish): 129104420
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Entry
129104420 CDS
T09102
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
afb03000
]
129104420 (sox1a)
Transcription factors [BR:
afb03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
129104420 (sox1a)
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
129104420
NCBI-ProteinID:
XP_054471072
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Position
16:complement(9267655..9276083)
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AA seq
344 aa
AA seq
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MYSMMMETDLHSPGPQTNTTTGQTGPNSGSKANQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGPGGGGGVGLGVGMSSSGVGQRLESPGGHGGSAGSGYAHMNGWANGAYSGQ
VAAAAAAAAMMQEAQLAYSQHPGSGAHHHHHSHHHHSHNPQPMHRYDMTALQYSPISNSQ
GYMNASPSGYGGITYTQHQGSGVSSSAAMGTLGSLVKSEPSVSPPVSSTHSRGPCPGDLR
EMISMYLPTGEPGDPSMQSRLHALPQHYQSATAGVNGTVPLTHI
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaactgacctgcattcccccggcccccaaacgaacacgacc
acggggcaaacggggccgaacagcgggtccaaagcgaaccaggagcgcgtgaagaggccg
atgaacgcgttcatggtgtggtcccgtgggcagcggaggaagatggcacaagagaacccc
aagatgcacaactctgagatcagcaagcggctcggcgccgagtggaaagtgatgtccgag
gctgagaagcgacctttcatcgacgaggcgaaacggctgagagccatgcacatgaaggag
catccggattacaagtatcggcccagacggaagaccaagacgctgctgaaaaaggacaaa
tattccctcgccggcggactgctttctgggcccggtgggggcggcggagtgggcttagga
gtcgggatgagttcctccggggtcgggcagaggctggagagccccgggggtcacggaggc
tccgccggctccggctacgcgcacatgaacggctgggcgaacggcgcgtactcggggcag
gtggcagctgccgcggcggccgcagccatgatgcaggaggcgcagctcgcctacagccag
cacccgggcagcggagcgcaccaccaccaccactcacaccaccaccactcacacaacccc
cagcccatgcaccgctacgacatgacggcgctgcagtacagccccatctcgaactctcag
ggctacatgaacgcttccccgtccggctacggtgggatcacctacacgcagcaccagggc
tccggcgtctcctcctcagccgccatggggacgttagggtcgctggtgaagtcggagccg
agtgtaagccctcccgtcagcagcacacactcacggggtccgtgccccggagacttgaga
gagatgataagcatgtatttaccgaccggagagccgggggacccgtcaatgcaaagtaga
ctccatgccctgccgcagcactaccagagcgccacggctggagtgaacgggacggtccct
ctcacacacatttaa
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