Anoplopoma fimbria (sablefish): 129104434
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Entry
129104434 CDS
T09102
Symbol
sf3b1
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129104434 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129104434 (sf3b1)
03036 Chromosome and associated proteins [BR:
afb03036
]
129104434 (sf3b1)
Spliceosome [BR:
afb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
129104434 (sf3b1)
Complex B
129104434 (sf3b1)
Complex C
U2 SnRNP specific factors
129104434 (sf3b1)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
129104434 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
Motif
Other DBs
NCBI-GeneID:
129104434
NCBI-ProteinID:
XP_054471092
LinkDB
All DBs
Position
16:21558831..21573609
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AA seq
1319 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLLEEGDQGVGLDSTGFFDQEIYGGSDSRFAGYVTSI
AANEQEEDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLVEKAKSG
DLKVVNGSAASQAAXRKRKRRWDQTADQTPTNTTPKKMSSWDQADSSAETPGHTPGHTPA
HTPSSTRWDETPGRAKGSETPGATPSTRMWDPTPSHTPAGAATPGRDTPGHATPGHGGAT
GSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQ
MGNSTPLMTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDELD
AMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNLP
FLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKARE
FGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDE
DYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLL
PFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTIS
ALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYY
TREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMAL
DRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADID
HKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSA
KVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG
MHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLEL
LKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP
FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHR
QTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCR
MLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDDKNMYVRYELDYAL
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacgcacgaagatatcgaggcccagatcctggagatccagggg
atgaaggccaccctgctggaggaaggagatcagggagtgggcctcgattccaccggcttt
tttgaccaggagatctatggaggcagcgacagccgttttgctggatatgtcacttccatc
gctgccaatgaacaggaagaagatgatgaagaggattcgtcaacaagcttgttgggacaa
aagaagccagggtaccatgcgccggtggcaatactcaacgccattccacagtcagacgag
caatacgacccatttgcagagcaccgtccgcagaagattgcagagcgggaagatgaatac
aaagcccggcgaagacagatgatcatctcacccgagcgtctcgaccccttcgcagacggg
ggcaaaacgccggaccccaagctgcaggtcaggtcgtacgtggacgtcatgttggagcaa
aatctgtccaaagaggagagggagatccgtcagcagctggtagagaaggccaaatctggg
gacctgaaagtcgtcaacgggtccgctgcctcccaagccgccngccgcaaacgcaagcgt
cgatgggaccagactgctgaccaaacccccaccaatactacacccaaaaagatgtccagc
tgggaccaggctgactcatccgctgagactccaggacacaccccaggacacacgcctgca
cacacaccctcaagcacccgatgggatgaaacccctgggcgcgctaaaggcagtgagacc
ccaggggccactcccagtacccgcatgtgggacccgactcccagtcacacgcctgctggc
gctgccacacctggcagggatacgcctggccacgccacccccggccacggaggagccaca
ggaagcgtacgcaagaaccgctgggacgaaaccccaaaaacagaaagggaaaccccggga
cacgggagcggctgggctgaaacgccacgcacagacagaggagacgagtcggtgggcgag
acgccaacaccaggggccagtaagaggaagtctcggtgggatgaaacccctgctagtcag
atgggaaactctacaccactaatgaccccaggaaagactcccataggaacgccagctatg
aacatggctaccccaacaccaggtcacctgatgagcatgactccagagcagctgcaggcc
tggaggtgggagagagagatcgatgagaggaaccggcctctcacagacgatgagcttgat
gccatgttcccagagggatacaaggtcttacctccaccagcgggctacgtgccgatccgc
actccggcccgtaaactgtcagccacaccgacccccatcggaggcatgacaggcttccac
atgcaggtggaggaccgcaccaccaaacagatgaatgaccagccctcaggaaacctgccc
ttcctcaaaccagacgacatccagtattttgacaaacttctggttgaggtggatgagtcc
acgctgagccccgaggagcagaaagagaggaagatcatgaagctgctgctcaagattaaa
aatggaacaccgcccatgaggaaggccgctctgcgtcagatcacagataaagctcgtgaa
ttcggagcaggacccctgttcaatcagatcctgccgttgctcatgtcgcccaccctggag
gaccaggagcgccacttgctggtgaaagtcatcgaccgcattctctacaagctggatgac
ctggttcgaccatacgtacacaagatcctggtggtgattgagcccctgctgattgatgag
gactactacgccagagtagaaggcagagaaatcatctccaacttggcaaaggctgccggt
ctggctaccatgatctccacaatgagacccgatatcgacaacatggatgagtacgtcaga
aacaccacagcccgagccttcgccgtggtggcctccgctctcggcattccgtccctcctg
ccgtttctcaaagctgtgtgtaaaagcaagaagtcctggcaggccagacacacaggcatc
aagatcgtgcagcagatcgccatcctcatgggctgcgccattctgccccacctccgtagc
ttggtggagattatcgaacacggtctggtagacgagcagcagaaggtgaggaccatcagt
gccctggctatagctgccctcgctgaagccgctacgccctacggtatcgaatccttcgac
tcggtcctcaagcccctctggaagggtatcagacaacacagaggaaagggtctggctgct
ttcctcaaagccatcggttacctgatcccactgatggacgccgagtacgcaaactactac
accagggaggtgatgctgatcctcatcagagagttccagtcccccgatgaggagatgaag
aagattgtactcaaggtggtgaagcagtgttgtggcactgatggtgtggaagccaactac
atcaagacggagatcctgcctccgttcttcaagcacttctggcagcacaggatggctctg
gacagacgcaactacagacagttggtggacaccacagtggagctggccaacaaagtggga
gctgcagagatcatttctcgcatcgttgatgacctgaaggacgaggcggagcagtacagg
aagatggtgatggagaccatcgagaaaatcatgggcaacctgggtgcggccgacatcgac
cacaagctggaggagcagttgatcgacggcatcctgtatgccttccaggaacagacaacc
gaggactccgtcatgctcaatggtttcggcacagtggtgaacgccctcgggaagcgtgtg
aagccctacctgcctcagatctgcggtacggtgctgtggcgtctcaacaacaagtccgcc
aaagtccgtcagcaggccgccgacctgatctcccgcaccgccgtggtgatgaaaacctgc
caggaggagaagctgatgggtcatttgggtgtggtgctgtacgagtacctgggagaggag
taccctgaggttttgggtagcatcctgggagcactgaaggccatcgtcaacgtcattggt
atgcacaagatgactccaccaatcaaagacctgcttcctcgtttgactcccatcctgaag
aacagacacgagaaagtgcaggagaactgtatcgacctggtgggcaggatcgctgacagg
ggagctgaatacgtgtcagccagggagtggatgaggatttgttttgagctgctggagctg
ctgaaggctcacaaaaaagccatccgcagagcaaccgtcaacacgtttggttatatcgcc
aaagccatcggccctcacgacgtcttggccacgctgctcaataacctgaaggtccaggag
cgtcagaacagagtctgcacgaccgtggccatcgccatcgtggccgagacctgttctccg
ttcacggtgctgccggcgctcatgaacgagtaccgcgtgcccgagctcaacgtgcagaac
ggcgtgctcaagtccctctccttcctgttcgagtacatcggggagatgggcaaggactac
atctacgccgtcacaccgctgctggaggacgcactcatggacagagacctggtccacaga
cagacggccagtgcggtagtccagcacatgtccctgggcgtctacggcttcggctgtgaa
gactccctcaaccacctgctcaactacgtgtggcccaacgtgtttgagacgtcgcctcac
gtgatccaggccgttatgggcgccctggaggggctgagggtcgccatcgggccctgtcgc
atgctgcagtactgcttacagggtttgttccatccggccagaaaagtgcgagacgtctac
tggaagatttacaactccatctacatcggctcgcaggacgccctcatcgctcactaccca
caagtctacaacgacgacaagaacatgtacgtccgctacgagctggactacgccttgtaa
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