KEGG   Anoplopoma fimbria (sablefish): 129104826
Entry
129104826         CDS       T09102                                 
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain
  KO
K06237  collagen type IV alpha
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb04382  Cornified envelope formation
afb04510  Focal adhesion
afb04512  ECM-receptor interaction
afb04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:afb00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    129104826 (col4a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    129104826 (col4a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    129104826 (col4a2)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    129104826 (col4a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:afb04147]
    129104826 (col4a2)
   00536 Glycosaminoglycan binding proteins [BR:afb00536]
    129104826 (col4a2)
Exosome [BR:afb04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   129104826 (col4a2)
Glycosaminoglycan binding proteins [BR:afb00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   129104826 (col4a2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 129104826
NCBI-ProteinID: XP_054471655
LinkDB
Position
16:complement(10193708..10254280)
AA seq 1675 aa
MSGTMQGQHNRGRDNLRLLILCLSIAILASGVHAGGKKHSGPCGGRDCSGGCKCFPEKGA
RGQPGLLGPQGPQGPSGRPGDHGIEGTRGQKGDHGRSGIIGPKGNVGMTGVPGFSGNDGI
PGHPGQAGPRGKPGADGCNGTHGDSGSMGQPGYNGSPGFPGQPGWKGQKGDSLELSVYMQ
RFRGDPGTPGVNGIFGPSGNPGWQGTRGLPGPKGPTGPPGPRGPKGAMTKVLKGLRGDQG
DIGPPGLPGNATHQLVQPPYGPLGPSGEKGLKGALGDPADNRGETGVKGFPGSRGFPGAD
GRAGPRGDIGEQGPKGRDGYKGVRGDPGELIPSGSLWPSAAGPSSPAGEQGPQGERGPVG
DQGFHGPPGRPASESQQQVWDFIGPFGLKGEPGDKGQQGEPGHPADIAGAPGISGRPGDT
GPRGPKGTWAEFFKGGPGGRGRPGNAGFKGGKGDHGLCECTVVNSPPGSLGPAGDRGDAG
MTGEFGLEGDSGGPGPQGDDGFPGSLGVSGLPGPKGQKGDLIVPTQKGYPGEPGDHGPDG
EPGALGAQGRNGLPGIPGTRGFPGEGPVGEVGDKGYPGQPGRPGAPGLTGTEGAVLGGIK
GQRGSPGDDGLAGYDGVPGTTGSPGGCSPTRDGEQVDVTGPCDAASGPPGLPGPPGPSGL
LGFPGPPGQKGPQGPFGAIGEKGETGDQGTGGHPGPPGFSGPRGALGVPGSKGSVGIPGA
PGVNGRYGAQGEKGVHGEIFGASPGPQGDPGLAGIQGNKGQIGDPGTLGYSGRAGMPGMI
GFKGESGPLGLQGEEGRPGPAGKYGYPGDSGQEGPPGPHGSTGQPGFTGERGTEGDPGPP
GPIGLKGFPGQHGYDGDVGEPGPSGDSGQTGADGRPGLLGIKGNKGSPGMSGFEGIRGNQ
GSKGFSGFSGEPGVVGQFGLKGVHGRSGEKGDRGLRGPSGEKPHIPAQMIVDMKGAKGDH
GHYGNQGFTGPRGTKGLPGVPGYGGTHGLPGGPSNKKGYPGDPGAEGLSGIKGMPGLTGN
RGITGFEGMQGNQGGKGSPGAYGPSGEIGRRGFKGEKGPRIDLPGTTGLRGEYGLPGEPG
QKGLFGQTGDRGSPGFDGIEGKRGEPGDPGTGGYPGSDGQKGTPGNQGPKGFTGSPGKDG
HPGLPGFPGNKGFPGLKGLYGLHGLKGQKGSPGTPGLDTTGRAGEPGGKGEKGEGGDRNN
QPGVPGTAGLKGFQGSLGDHGQPGLPGFRGTIGPNGTPDRPGYRGDPGSTGPKGYQGFPG
ANGFPGLDAPPGDKGVQGFMGFPGAPGSKGFRGDQGSFGYRGPNGVSGKKGIKGEQGVMG
VPGVVGVKGERGPSGPKGNTGLQGFHGIPGKQGPLPVPIRIPGERGPAGPQGIQGPNGFR
GESGPQGPPGDAGFIGPNGQRGMPGISGRPGTPGFRGEFGQEGHPGLQGMEGHRGNPGIP
GLPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGS
CLPKFNSMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIRPYISRCSVCEAP
SVAIAIHSQDITIPQCPSGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFI
ECNGAKGTCHYFANKHSFWLTSVDQSFHTEPASETLKAGQLLSRISRCQVCMKNL
NT seq 5028 nt   +upstreamnt  +downstreamnt
atgagtgggaccatgcaaggacaacacaacagaggacgggacaatctgaggctgctgatc
ctatgcctctccattgccatcctcgcctcgggagtgcacgcgggtgggaagaagcacagt
ggcccctgtggaggaagagactgcagcggaggctgtaaatgtttcccagagaagggtgcc
aggggtcaacctgggcttcttggtcctcagggcccccaggggccttcggggagaccaggt
gatcatgggatcgaaggtacaagggggcagaaaggtgaccatggccgcagtggcatcata
ggtcctaaaggcaatgtgggaatgaccggcgttcctgggttttctggaaacgatggcatt
cctggccacccaggacaagctggacccagggggaagccaggagcagacggctgtaacggg
acacacggagattcagggtcgatggggcaacccggctataatggctcacctggttttccc
ggacaaccaggttggaaggggcagaagggagactctctggagctgagcgtgtacatgcag
cgctttaggggagatccaggcacaccaggagtcaacggaatatttgggccttcaggaaac
ccaggatggcagggaaccagaggcttaccaggaccaaagggtcccacagggcctcctggt
ccccgtggaccaaagggcgctatgaccaaagtgctgaagggactcaggggagaccaaggg
gacatcggaccaccggggcttccaggaaacgctactcatcagctagttcagcccccctac
ggacccttgggacctagtggagagaaaggtctgaaaggagcattaggagatccggctgac
aacagaggagaaactggtgtgaaaggattccctggatcacggggtttccctggtgcagat
gggcgtgctggacctaggggggatataggcgaacaaggaccaaaaggcagagatggttat
aagggagtcagaggtgaccctggagaattgataccatccggatccctttggccctcagca
gctggtccttccagtcctgctggtgagcagggtccgcagggagagaggggcccagttgga
gaccaaggcttccatgggcccccgggacgccccgcctctgaatcacagcaacaagtttgg
gatttcatagggccatttggtctaaagggggagccaggagataagggccaacaaggggaa
ccaggacatcctgctgacatagcaggagcaccaggcatcagcgggcgcccgggggacact
ggccctcgaggacccaaaggaacatgggctgagttcttcaaagggggtcctggtggaaga
ggaaggcccggcaatgcaggctttaaaggagggaaaggtgatcacgggctgtgtgaatgc
actgtggtaaactctccaccggggtcacttggccctgctggtgatcgcggtgatgctggg
atgactggagagtttggtctggagggtgattcaggcggtccaggtccccaaggagacgac
ggatttcctggatctcttggggtcagcggtctgccgggtccaaagggtcaaaaaggggac
ttgattgtgcctacacagaaaggatatcctggagaaccaggggatcacgggccagacggt
gagccgggagcgttgggtgctcaaggccgaaatggtttacctggtatccctggcacccga
ggttttccaggagaaggtcccgtaggagaagtgggagacaaaggttacccaggtcagcct
ggtcgacctggtgcacccgggcttactgggacagaaggtgcagtccttggagggatcaaa
ggccaacggggttcacctggtgacgacggcctggcgggctatgatggagttccaggaaca
actggcagcccaggaggctgtagtccaacaagagatggagaacaagtggatgtaacaggt
ccttgcgatgctgcttctggaccccctgggctgcctggacctccaggacccagtggacta
ttaggtttcccaggtcctccgggccaaaaaggaccacagggtccatttggagcaatcgga
gaaaaaggagaaacaggagatcaaggcacaggtggccatcctggaccaccaggtttttcc
ggcccccgtggagccttgggggttcctggcagcaaaggttccgtaggaatccctggtgcg
cccggtgtaaacggccggtacggggcgcaaggtgagaagggtgttcatggagagatcttt
ggagcatcgccaggaccccaaggtgacccggggctggctgggatccaagggaataaaggc
cagatcggtgatccagggacgttaggctattcaggaagggccggcatgcctggtatgatc
ggttttaagggtgagagtggccctctaggcctgcagggggaggaggggagacctgggcca
gcaggcaagtacggctaccccggtgattctggacaagaaggtccacctgggccgcatggg
agtactggacagccaggtttcactggagagaggggaactgaaggggacccgggtcctcca
ggtccaataggattaaaaggcttcccagggcagcacggttatgatggtgacgttggagag
cctggcccttcaggtgactctggacagactggtgcagatggacgtccaggtcttctagga
ataaagggaaacaaagggtctcccggcatgtcaggttttgaggggatcaggggtaatcaa
gggtcgaagggcttcagcgggttcagtggagaacctggagttgtgggtcaatttggccta
aaaggagtgcatggtcgaagtggagagaaaggtgatcgtggtttgagagggccatccggg
gagaagcctcacatccccgcccagatgattgttgacatgaagggggccaagggcgaccat
ggacattatggaaatcaaggttttaccggaccaagaggtactaagggtttacctggtgtg
ccgggctacgggggaactcatggtcttcctggaggccccagtaataagaaaggctaccct
ggagatccgggcgcggaggggttgtcgggtataaaaggaatgccaggcctaactggaaat
cgaggaattactggttttgagggaatgcaaggcaaccagggaggtaaaggaagtcctggt
gcctacggaccatcaggagaaataggaaggaggggattcaaaggtgagaaaggcccgcgc
atagaccttccaggaaccaccggattgagaggagagtatggtcttccaggagaaccaggc
cagaaaggattatttggacaaacaggtgacaggggttcacctggttttgatggaatagaa
gggaaaaggggagagccaggcgatccaggaacaggagggtacccaggctctgatgggcag
aagggaacacctggtaaccaaggtccaaaaggctttactggatctcctggaaaagatgga
catcctggtttacctggttttccaggaaacaaaggtttccctggcctgaaaggtctttat
ggattacatggactgaaaggacaaaagggttccccaggaacaccaggtctggataccact
ggacgagcaggggaaccaggaggcaaaggagaaaagggagagggcggcgaccgcaacaac
cagccaggtgttcctggcacagcgggtttgaaaggcttccagggatctctaggtgaccat
ggtcaacctggacttccaggatttcgcggcaccataggaccaaatgggacaccagacaga
ccaggatacagaggtgaccctggctctacaggacctaaagggtaccaaggtttccctgga
gccaatggatttcctggcttggatgctccccctggtgataagggtgtacagggatttatg
ggatttccgggagcccctggtagtaaaggattcagaggagatcaaggttcctttggatac
agggggccaaatggtgtttctgggaagaaaggaataaaaggagagcaaggagtaatggga
gttcctggtgttgttggtgtgaagggcgaaagaggcccaagtggtccaaaaggaaacact
ggacttcaaggttttcatgggattccaggaaaacaaggtcctcttccagttcccatcaga
attccaggagagaggggccctgcaggaccacaggggatccaaggaccaaatgggttcaga
ggggaatcagggccacagggcccccctggtgatgcaggtttcataggaccgaatgggcag
aggggcatgcctgggataagtggtcgaccaggaacacctggatttcgtggagagtttgga
caagagggccaccccggcctgcagggcatggaaggtcaccgtggcaaccctggtatcccc
gggctgcccggtatgccgggccgcagtgtcagcgtgggttacttgctggtgaaacacagt
caatcagaacagacacccatgtgtcctgtgggtatgtctaaactgtgggacggctacagt
ctgctgtacctcgagggccaggaaaaggcccacaaccaggatctgggtttggctggttcc
tgcctcccaaagttcaacagcatgcccttcctgtactgcaatcctggagatatctgttac
tatgccagcagaaatgataaatcctactggctgtcgacgactgctcctcttcccatgatg
ccagtagaagagggagagatccgaccgtatatcagccgctgctcagtttgcgaagctcca
tcagttgccatcgcaatccacagtcaggacatcaccatcccacagtgtccttcaggctgg
cgcagcctgtggatcggttactctttcctcatgcacacagcagcaggaaatgaaggcgga
ggtcagtcgttgtcatcacccggctcttgcctggaggacttccgcacaacacccttcatt
gagtgtaacggggccaaaggcacatgccactactttgctaacaagcacagtttctggcta
acctccgtagatcagtccttccacactgagccggcatcagagacgctcaaagcaggtcag
ctcctgtcacgcatcagccgctgccaggtctgcatgaagaacttgtga

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