Anoplopoma fimbria (sablefish): 129104935
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Entry
129104935 CDS
T09102
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03013
Nucleocytoplasmic transport
afb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129104935 (upf3a)
03015 mRNA surveillance pathway
129104935 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129104935 (upf3a)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129104935 (upf3a)
mRNA cycle factors
P-body specific factors
129104935 (upf3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
PagP
Motif
Other DBs
NCBI-GeneID:
129104935
NCBI-ProteinID:
XP_054471775
LinkDB
All DBs
Position
16
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AA seq
468 aa
AA seq
DB search
MRSEKDQMTAGKEKSVVEIQFRDVPREQENIPGNLKQKEEKKEVFTKVVIRRLPPSLSKE
QLEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYVNFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSDKDIKIKLLKKSDRDDDVDSDRIKDKSDVGETDRCKWEKAGGQTKTK
DPKEKGQPESDKEQREQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYC
QDRAKKEGHHHGGYSYCPDSGDKLGKEDREDLGSRKERLRNKVSEKDRPAMQLYQPGARN
RKRMSSTGKGYDCIPVGHSPEPGTEHCYEAAAMATGLEKGFDKSKDEQ
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgaccgcgggcaaggagaaaagcgtggtggagatccag
ttcagagacgtcccgagggagcaggagaacatccccggtaacctgaagcagaaagaggag
aagaaagaggttttcaccaaggtggtgatccgaaggcttccacctagcctgtcgaaggag
cagctagaggagcagctcagtccgcttccatcctatgactattttgagttctttccggct
gatcaaagtctttatccccacctgttctccagagcgtatgtcaatttcaaaaaccctgaa
gatatcctcctgttcagggaccggtttgatggctacgtcttcattgacaacaagggccag
gagtatcctgccgtggtggagtttgcccccttccagaaaatctccaagaagaagctgaaa
aagaaagatgccaaagccgggagcattgaagaagacccagagtataaacggttcttggag
aattactcctgtgatgaagagaagtctatggccaacccagagactctgctgggagagata
gaggccaagaccagagagctcatagccaaacggacaacaccactgttggagtacatcaaa
aataagaaaatcgagaaacaaaggataagagaggagaagagggaggagaggaggaggagg
gagctggagaagaaacgacaaagggaggaggagaagaggaagcggcgggaggaggagaga
cgcaaacggaaagaggcggagaagcagaagaaattgtctgataaagacatcaaaatcaag
ctcctgaagaagagcgacagggacgacgacgtggattcagaccgaatcaaggacaaaagt
gatgtcggggagacggacagatgtaaatgggagaaagctggaggacaaacgaagacgaag
gacccaaaagaaaaaggtcagcctgagagtgacaaggagcagagagagcagcacggccgt
agacagagagataaggatcaccgtgggaaggacgaggagaggaaacggcagcggcaccac
tacgagtttgacaagttcatgcgccgcaaagacgagaccaaatgggggaagggctactgc
caggaccgagccaagaaagaggggcaccatcatggcggctactcctactgccccgacagt
ggagacaaacttgggaaggaggacagggaggacctgggtagcaggaaggaacgcctccga
aacaaggtgagcgagaaggaccgtccggccatgcagctctatcagccaggagcacgtaac
aggaagcgcatgagctcaactggcaaaggctacgactgcatccctgtgggccactccccc
gaacccgggacggagcattgctatgaggcggccgctatggcaacgggcctggagaagggg
tttgacaaaagcaaagatgaacagtga
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