Anoplopoma fimbria (sablefish): 129105060
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Entry
129105060 CDS
T09102
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129105060 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129105060 (bard1)
04121 Ubiquitin system [BR:
afb04121
]
129105060 (bard1)
03036 Chromosome and associated proteins [BR:
afb03036
]
129105060 (bard1)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129105060 (bard1)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
129105060 (bard1)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
129105060 (bard1)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
129105060 (bard1)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
129105060 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_3
Ank_4
Ank_5
BRCT_2
BRCT
Ank_KRIT1
zf-RING_5
zf-RING_10
CDK5_activator
Prok-RING_4
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
129105060
NCBI-ProteinID:
XP_054471908
LinkDB
All DBs
Position
16:15466163..15486437
Genome browser
AA seq
793 aa
AA seq
DB search
MENGDWKNTKEAVRNFRQLLLCSKCSNLMTEPVCLGMCEHMLCRSCAGPKAGEGCVVCQS
PAWVKDIQINRQLSSIIQLFSGLEFLLNPIDQPDSSPAKNQTQPQSPIFKQKKNFKIWFS
PRSRKVRCMVQKPSEVLVPESTSSPGAARQDTFTAQCQDLSVFNFTSSSQDYGSSCSQSC
NNEKGKKGSTKKNAAIRKVSVRGATKTTRKQTKQKMKKHRLEAINQQWGITEEVDALKEK
EQNCAEGARRSSKRVSFLSPADTSDEPQPTVPQGSTNELIPCLGAMRKSLLEGSVAILND
QTQPGEKMSDSVGQHDKLSETNSPEKLDSVPPPKHSSKRSRVEEKVATLETTPKRPRASP
GRRRKSQMSPAVLNPLSSASPRCDGSIRNSREEQGDSPSVPASVGRKSPSTPVASVGRPS
SGSPAVMKRNHKGETLLHLAAIKGDVETVKNLLDQGADPNLKDNAGWTPLHEACNLGHLE
VVEVLVSRGALLNTPGYENDSPLHDAVRNEHPAIVKLLLQFGASQNILNLHGKRPADYAV
SPEMLKIFQEASEGAKYATTSLSPSTNLSIVSDCVRREEMLVLLGSKLSKPEQVQVAKLG
ELLGGRMADTFSGLVSHVVVPEGHFPTTISSLLGLLAGCWVVKLSWVESCLHAGKWMPES
EHEAGEGPQRSRINRCSLLPPLFDGCFFFLLGSFKAPSKDELTKLLREGGGQLLSRQPKP
DSDVTQTLSAAAYHALPGSDQALCTQYIIFDPQGPHKPAVVRRGKVWSAPSTWLIDCIKA
FRLLSVPDCQTSV
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggagaacggtgactggaagaacactaaggaggcggttaggaactttcgacaactgcta
ctttgctccaaatgctcaaatttaatgacggaacctgtgtgtctaggaatgtgcgagcat
atgctgtgcaggtcctgtgctggccccaaggcaggagaaggctgtgtggtgtgtcagagt
cctgcgtgggtgaaggacatccaaatcaacaggcagctcagcagcatcatacagctcttc
tccggtttggagttcctgctcaatcccatagatcaaccagattcctctccagccaagaat
caaacccaacctcagagccctattttcaaacaaaagaagaacttcaagatctggttcagc
cctcgcagccgcaaggtacgctgcatggtgcagaaaccttccgaggtcctcgtaccggag
agcacgtcttctcctggtgcagcacggcaagacacctttactgctcaatgccaagacctg
tcagttttcaatttcacctcgtcctcccaagactatggctcatcttgttctcaaagttgc
aacaatgaaaaaggtaagaaggggtcaacgaagaaaaatgctgccatcaggaaagtgtca
gtgcgaggagccactaagaccacacgaaaacagaccaagcagaagatgaagaagcacaga
ctggaggctataaaccagcaatgggggatcaccgaggaggtagatgctttaaaagaaaag
gagcagaactgtgctgaaggggcaaggaggtccagtaaaagagtttccttcctcagccct
gctgacacctctgacgagcctcagcctacagtgccacagggcagtactaatgaactcatc
ccctgcttaggagctatgaggaagagtctcttagaaggcagcgtcgctatactgaacgac
caaacccagcccggtgagaaaatgtcggacagtgtcggccagcatgacaaactgtctgaa
actaacagtcctgaaaaactggacagcgtacctcccccaaagcattcatcaaaaagatcc
agagtggaggagaaggttgccacgttggagaccacaccgaaaaggcccagggcttctcct
ggcaggcggagaaaatcacagatgtctccagctgtccttaaccctctttcttcggctagc
cccaggtgtgacgggagcatcagaaactcaagagaagagcagggagacagcccctctgtc
ccagcctctgttggtagaaaatctccttctactcctgttgcatctgttggacgacccagc
tcagggagccccgcggtgatgaagaggaaccacaagggagagaccctgctgcatctagct
gcaataaagggagatgtagagactgtcaagaacctgctggaccagggagctgaccctaac
ctgaaggataacgccgggtggacacctctgcatgaagcatgtaacctgggtcacctggaa
gttgtggaggtgttggtctcaaggggagccctgttgaatacgcctggctatgagaatgac
tctccgctccacgatgccgtgaggaacgaacatccagccattgtcaagctgctgctgcag
tttggagcctcgcagaacatacttaatctgcatggaaagaggcctgccgattacgcagtg
agtccggagatgctgaagattttccaggaagcgtcagaaggagccaaatatgctactaca
tctcttagcccctcaactaatctctctatagtgagcgactgtgtgaggagggaggaaatg
ctggtgcttctgggcagcaagctgtcaaagccagaacaggttcaagtggccaaactggga
gagcttctgggagggaggatggctgacaccttctctggcttagtgagccatgttgtggtg
ccagaaggccacttccccaccaccatctcctccctccttggtcttcttgccggctgctgg
gttgtcaaattgagctgggtggagtcgtgtctgcatgcaggcaagtggatgcccgaaagt
gagcacgaggcgggagaaggcccccagcgcagtcgcatcaacagatgtagcttgctcccg
ccactcttcgatggctgtttcttcttcctccttggctcctttaaggcgccttccaaagac
gagctcaccaagctgctccgggagggaggaggtcaactcctgagccggcagcccaagcct
gacagcgatgtgacacaaaccctgagtgccgctgcctaccacgcacttccgggctctgac
caagccctctgcacccagtacataatctttgacccccagggccctcacaagccggcagta
gtgaggagaggtaaggtgtggtcggctccctccacctggctcatcgactgcatcaaagcc
ttccgtctcctctccgtgccagactgtcaaacctcggtctga
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