Anoplopoma fimbria (sablefish): 129105081
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Entry
129105081 CDS
T09102
Symbol
si:ch211-199f5.1
Name
(RefSeq) protocadherin-8
KO
K16499
protocadherin delta 2
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
afb04515
]
129105081 (si:ch211-199f5.1)
Cell adhesion molecules [BR:
afb04515
]
Cadherins
Protocadherins
129105081 (si:ch211-199f5.1)
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
TMEM154
DUF5783
FctA
Motif
Other DBs
NCBI-GeneID:
129105081
NCBI-ProteinID:
XP_054471940
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Position
16:complement(11617065..11620456)
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AA seq
992 aa
AA seq
DB search
MRLPTEGRITTKMIKGKSITYWHRWIFIFSIHQLLFASLAQSEGNTIRYQTNEEDASGTV
IGNLAKDMSLSLSHASKTNFRMMKQFNDSFIRVRESNGELTVGERIDRERICRHTLQCLI
TFDVVNFSKDRYRLIHVEVEIKDINDNSPEFPNKESTVEMSENAAAGSRVPLDPAADADV
GSNYIQSYQISVNSHFTIDVLLRADGVKYAELVLMKELDRETQSSYIVELVATDGGNPYR
SGSTKINIKVTDFNDNSPVFDQSSFSVSLPEDAPAGAVILDLNAVDADEGLNGEVVYGFG
KQVSHEIRQLFQVDNKSGRLTLRSTVDFEDKNTYELDVQATDLGPNPTPSVCKIIIHVTD
VNDNVPEISITPMTSITTGIAYISEAADKDSLVALVSTLDRDSGVNSQVHCTLYGHDHFK
LRQAYEDSYMIVTAAVLDRERISEYNLTVMAEDFGSPPLRKITQYTIRLSDENDNAPHFT
KAVYEVSVVENNAPGAYITTVEASDADLGNNGKITYRLVDSLIMGSPVNTFVSLNSVSGS
IYALRSFNYEVMKLLDIHIQASDGGSPQLQSTAVIRLKIVDQNDNQPSIIDPPLYKGSAE
VFLPKDAPAGYVVTQIKATDADEGINAQLSYKITEGGHLGFSINKDNGKVHVSRQLTYDI
TDNVKVTVSVSDNGSPALTSTAIIHFSFIEGSLPSMPSLAQNGSEELFEWDMSIAIIIVL
AGSCSLLLLAIILITTICSRRKKETREGGYEDKEETPNVEKVESGHVDSLIANHKGKVFD
AHPFPEKPPLASSNTTETGCEDGRQTAGVFDSNSRVMDGKLKGYSTLPGYGKETVRPITI
WKGNSFTTISARDPHISGKDSGKGDSDFNDSDSDISGDVHKKESPPTNSLWACTSECKVL
GHSDRCWSPSATRPNTSMACGPHLSTFNKTASLPRNTGRENYYPAHIPKTNALQSVYEKV
QHQEFDYILVGPPTPARIQEADEISIPEYTNS
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcctaccgaggggaggattaccacgaagatgataaagggcaaatctataact
tattggcaccggtggatttttatattctcaatccatcaattgttatttgcctcactggct
cagtccgagggaaacactatccgataccagaccaacgaggaggacgcatcaggtacagtc
atcggaaaccttgccaaggacatgtccttgagtctgtctcatgcctctaagaccaatttc
aggatgatgaaacaattcaacgactcgttcatcagggtgagagaaagcaacggggaactc
actgtcggggaacgaatcgacagggaaagaatctgcagacacactctccagtgtctcatc
acttttgacgtggtcaatttctccaaagaccgctacagattgattcacgttgaggtggaa
ataaaggacatcaatgacaactctccggagtttccaaacaaagaatccacagtggagatg
tcagagaacgcagcagcggggtcccgtgtccctttagacccggctgcagacgctgatgtt
gggtcaaactacatccaaagctatcaaatttctgtcaacagtcatttcaccattgatgtg
ctcctgagagcggatggggttaaatatgcggaattggtgctaatgaaagagctagacagg
gagactcagtcatcatacattgtggagctggtcgccacagacggaggaaacccttacaga
tcgggctcaacaaagataaatatcaaagtgactgactttaacgacaatagtcccgttttt
gaccagagtagtttctcagtcagtctgccagaggacgcaccggctggcgctgttattctg
gacttgaacgcagttgatgctgatgagggcttaaacggagaggtcgtctacgggttcggg
aaacaggtttctcatgagatccgacaacttttccaagtggataataaatcaggtcgcctg
acgctcaggagcactgtggattttgaggacaaaaacacctatgagctagacgtgcaggcg
accgatctgggacccaacccgaccccctccgtgtgcaaaatcattattcacgtcacagac
gtcaatgacaatgtcccagaaatcagcatcaccccgatgacctccatcaccacgggcatt
gcgtacatcagcgaggcggcagacaaggacagtctggtggcgctggtcagcaccttggac
agagactcgggtgtgaacagccaggtccactgcacattgtacggccacgaccatttcaaa
ctccggcaggcttacgaggacagctacatgatagttacggcggcagtcctagacagggag
aggattagtgagtataacttgacggtcatggctgaggattttggctcacctccgctgaga
aagatcactcagtacaccatcagactcagcgacgagaacgacaacgcccctcactttacc
aaagccgtctatgaagtttcggtggtggaaaacaacgccccgggcgcttatatcaccaca
gtggaggccagtgacgcggatctgggcaataacggcaaaatcacataccgacttgtggac
agtcttatcatggggtccccagtgaacacctttgtgtctcttaattcagtgtctggctct
atatatgcactcagaagttttaactacgaagtgatgaaactgctagacatacacatccaa
gcaagtgacggggggtcaccacagctgcagagcacagcggtcatcagactaaaaatagtt
gatcagaatgacaaccaaccgtctatcatagatccaccgctttacaaaggatctgctgag
gttttcctgcccaaagatgcacctgcaggctatgttgtaacccagataaaggccacagat
gccgatgaaggcataaatgcacagctgtcctacaaaatcacagaggggggacacctgggt
ttctctatcaacaaagacaatgggaaggtgcatgtgagccgacagctaacgtatgatatc
acagacaatgtgaaagtcacagtgtcggtcagtgacaatggatccccggcacttacctcc
acagccattatacacttcagcttcatagaaggatctctacccagtatgccttccttggct
caaaatggcagcgaggagctctttgaatgggacatgtccatagccataatcattgtcctg
gcagggagctgctctctcctcctgctggctattattctcatcacaaccatttgcagccgg
cggaaaaaagagacaagagagggggggtacgaggataaagaagagacaccaaatgtggag
aaagtggaaagtggtcatgttgattcattgattgcaaaccacaaaggcaaagtgtttgat
gcccatccatttccagagaaacctccattggccagcagcaacacaacagagacaggctgc
gaggatggcaggcagacagcaggcgtgtttgactcaaacagcagggtgatggatggtaaa
ttaaagggttactctacactaccgggatatgggaaagaaacagtcagaccaataacaata
tggaagggtaattcattcacaacaatctcagcaagagatccacacatcagtggcaaggac
agtggaaaaggggacagtgacttcaatgacagtgattctgacataagtggagatgtgcac
aaaaaagagtcgccgccaacaaacagtctctgggcatgtactagcgagtgcaaagtgttg
ggacactcggaccgatgctggagcccttctgctacgaggcccaacaccagcatggcctgc
ggaccgcacctgtcgaccttcaacaagactgcctcacttcctcggaacactggacgggaa
aactactatccagctcacatacccaaaaccaacgccctgcaaagtgtgtacgaaaaagtc
caacaccaggaatttgattatatcctcgttggtccaccaacaccggccagaatacaggaa
gctgatgagatttccattccagagtacacaaactcttaa
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