KEGG   Anoplopoma fimbria (sablefish): 129105467
Entry
129105467         CDS       T09102                                 
Name
(RefSeq) WD repeat-containing protein 82-like
  KO
K14962  COMPASS component SWD2
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:afb00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    129105467
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:afb03019]
    129105467
   03036 Chromosome and associated proteins [BR:afb03036]
    129105467
Messenger RNA biogenesis [BR:afb03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     129105467
Chromosome and associated proteins [BR:afb03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     129105467
    COMPASS/SET1 complex (yeast)
     129105467
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WDR55 EIF3I ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st DSE1_N WD40_MABP1-WDR62_2nd Beta-prop_EML WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_EIPR1 NBCH_WD40 Beta-prop_ACSF4 Beta-prop_VPS8 Beta-prop_Nup120_160 Beta-prop_HPS5 PAC11 Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 129105467
NCBI-ProteinID: XP_054472481
LinkDB
Position
17
AA seq 315 aa
MKITDGVIRSFRVARSYRENAQKVNCVDFSPNGENAISSSDDDCIVLYDIREGKPERTLF
SKKYGVDLIHYTHGDAQTVVYSSNKLDDTIRYLSLTDNKYIRYFPGHTARVIALSMSPVD
DTFISGSLDRTIRIWDLRAPNCQGLTNPLGKPVCSFDPDGLIFAAGVESEAIKLYDLRAF
DKGPFASFDTRFNRVCDWTGLKFSNDGKQILISTNGGMIRVLNAFNGSVLHTFSGYNNSK
GISLEACFTPDSQFVMIGSEDGRVHVWSTESGMKVAVLDGKHPGPINTLQFNPRYMTFAS
ACTNMTFWLPCFDDT
NT seq 948 nt   +upstreamnt  +downstreamnt
atgaagatcacagacggcgtgatacggagttttagagttgccagatcatatcgagaaaat
gcacagaaggtcaactgtgtggacttcagcccaaatggtgaaaatgcaatatcaagtagc
gacgacgactgcattgtgttatatgacatccgagaaggaaagcctgaaaggaccctgttc
agcaagaagtatggagtagacctcatccactacacacatggagatgcacagacagtagtc
tacagctcaaacaaactagatgataccatccgatatctgtcactcactgacaacaagtac
atcaggtatttcccaggtcacactgcaagagttattgctctttcgatgtcaccagtagat
gatacatttatctcgggctcgttggacagaacaatccggatctgggatctgcgtgctcca
aactgtcaaggtttgactaatccactgggaaaacctgtctgttcctttgaccctgatggg
ctgatatttgctgcaggggtggaatcagaggccattaaactatacgacctccgagctttt
gacaagggaccctttgcctcctttgatacgaggtttaatcgtgtctgtgactggactgga
ctcaaattcagtaacgatgggaaacagattctcatctctaccaacggagggatgattcgg
gtcctgaatgctttcaatggatctgtgctgcacactttttctggctacaacaacagtaaa
ggcatctccctggaggcctgcttcactccagactctcagtttgtcatgattggctcagag
gatggcagagtccatgtttggagcactgagagtgggatgaaggttgctgtgctggatggg
aaacatccaggacccatcaacactctgcagttcaaccccagatacatgacgtttgccagc
gcctgcactaacatgacattttggctcccgtgttttgacgacacgtag

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