Anoplopoma fimbria (sablefish): 129105682
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Entry
129105682 CDS
T09102
Name
(RefSeq) ATP-dependent RNA helicase DDX19A
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03013
Nucleocytoplasmic transport
afb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129105682
03015 mRNA surveillance pathway
129105682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129105682
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129105682
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129105682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF1028
Motif
Other DBs
NCBI-GeneID:
129105682
NCBI-ProteinID:
XP_054472814
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All DBs
Position
17:2128347..2134384
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AA seq
490 aa
AA seq
DB search
MATDSWAQAVDEQEAAAESIGGLQIKDKPEENGTAAIATDSSSAAAKSEVGAENKGTDED
ETDKDDKAAQSLLNKLIRNNLVNNTNQVEVLQKDPNSPLYSVKSFEELRLKPQLLQGVYG
MGFNRPSKIQETALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSHVDPNKRYPQCLCVS
PTYELALQTGKVIEQMGKHYPEVRLVYAIRGNKLQRGIKLEEQIVIGTPGTMLDWCGKFK
FIDPKKIMVFVLDEADVMIATQGHQDQSIRIQRMLPKNCQMLLFSATFEETVWSFAQRIV
PDPNIIKLKREEETLDTIKQYYVLCNSREEKFQALCNLYGAITIAQAMIFCHTRKTAGWL
AGELSREGHQVALLSGEMQVEQRAAVIDRFREGKEKVLVTTNVCARGIDVEQVSVVINFD
LPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSKMSMNILNRIQEHFSKRIEKLDTD
DLDEIEKIAS
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggctacggactcctgggcccaagctgtggacgagcaagaggccgcggcggaatcgatc
ggtggcctccaaataaaggacaaaccagaggaaaatggcacggctgcaattgcaacagac
tccagcagtgcagctgcaaagtcagaagttggggcagaaaacaagggaacagatgaagat
gaaactgacaaagacgacaaagcggcacagtcattattgaacaagctgatacggaataat
cttgttaataacacgaatcaagtggaagttcttcagaaggatcccaactctccgctctac
tctgtcaagtcctttgaggagttgcgactcaaaccacagctgcttcagggcgtgtacggc
atgggtttcaacagaccatccaaaatccaagagactgccttacctatgatgctggccgaa
cctccacagaatctgattgctcagtcgcagtcgggaacagggaaaacagctgcctttgtc
ctggccatgctcagtcatgtagatcccaacaaaagatatccccagtgcctgtgtgtgtca
cccacctatgaactggcacttcagactggcaaggtaatcgagcagatgggcaaacactat
cctgaggtcagactagtctacgccatcagaggaaataaattgcagcggggcattaagctg
gaggaacagatagttatcgggacacctggcaccatgcttgactggtgcggcaaattcaag
ttcatagaccccaagaagatcatggtatttgtgcttgatgaggccgacgtcatgatcgca
acacagggtcaccaagaccagagcatccgcatccagaggatgctgcctaaaaactgccag
atgttactgttctcagccacgtttgaggagacagtgtggagcttcgcccagcgcattgtg
cctgaccccaacatcatcaaattaaagagagaagaggagacgctggacaccatcaaacag
tactacgtgttgtgcaacagcagggaggagaagttccaagccctctgtaacctctacgga
gctatcaccatcgcccaggccatgatcttctgccacacaaggaagacagcaggctggctt
gcaggggagctgtccagagaaggccaccaggtggcactgctcagtggagagatgcaggtg
gagcagagagctgctgtcatcgaccgcttcagagaaggcaaggagaaggtcctggtcacc
acaaacgtttgtgccagaggcatcgatgtggagcaggtttctgtcgtgatcaactttgac
ttgccagtagacaaggatggtaacccagacaacgagacgtacctgcacaggatcggtcgc
acaggtcgatttggcaaaaggggactggccatcaacatggtggacagcaagatgagcatg
aacatcctcaacaggatccaggagcatttcagtaagagaattgaaaaactagacacagat
gatctggatgaaattgagaaaatcgccagctaa
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